| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bcen2424_6784 |
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| Symbol | |
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| ID | 4454677 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Burkholderia cenocepacia HI2424 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008544 |
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| Strand | - |
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| Start bp | 1050257 |
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| End bp | 1052185 |
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| Gene Length | 1929 bp |
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| Protein Length | 642 aa |
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| Translation table | 11 |
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| GC content | 71% |
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| IMG OID | 639698846 |
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| Product | type II and III secretion system protein |
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| Protein accession | YP_840406 |
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| Protein GI | 116687159 |
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| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG4964] Flp pilus assembly protein, secretin CpaC |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 12 |
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| Plasmid unclonability p-value | 0.0225639 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 6 |
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| Fosmid unclonability p-value | 0.0762258 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAAGATCA AACCGCAACG CACAGGTACC GGCCCGCTGC GCACACGCGT CGCACGGGGC
ACGATGATGG CCGCGATCCT CTGTTCGGGA TGGCTGACCG TGTATGGCGC GCTCGCGCAG
GAAGGCATCG AGTCGGCGGT GCTGACGAAG GGCGGCGCCA GCGCGCCGGC CGCGGTCGGC
AAGGGGCCGA TGCAGATGAC GATCAGCATG GCGCCGGTGC CGGCCGCCGC GCCCGCCGCG
TCGGCGGGGC CGCTGCGCGG GCCGAACTGC GTCGGCGCCG TGCGCGAATC GACCAGCGTC
GCCGTGCCGC TCGGCAAGTC GCTGCTGGTG CCGATGCCGG AGCCGGTCCG CAATCGGACG
ATCGGCAACC CGGCCGTCGC GCAGGCGACG ATGGTGTCGC CGCAGACGCT GTACATCCTC
GGGCTTGCGG TCGGCACGAC CAACATGATC GTGCAGGGCA GGAGCGGCGC ATGCCGCGTG
ATCGACGTCG CGGTCGGCGC GGACGCCGGC GGCCTGCAGG CGTCGCTGTT GCAACTGATG
CCGAACGAGC GCGACATCCA TGTGTCGACC GCGGCCGGCA CGATCGTGCT GGCCGGCACC
GTGTCGAGCT CGCAGGCCGC GCAGCAGGCC GTGCAGATCG CCCATGCGTA CGGCGACAGC
GCGGGCGATG CGGCAGGCGG CAAGCAGGGC GGCGGCGTGC TCAACATGCT GAACGTCACG
TCGCCGCAGC AGGTGATGCT CGAGGTGAAG GTGGCCGAGG TGTCGAAGAC GCTGATCAAC
CAGATGGGCA GCGCGTTCAA CATCCAGGGC GGGTTCGGTT CGTGGAGCGG CGCGCTGGTC
AGCAACCTGC TCGCGGGCGT CGCGAGCGGC GCCGTGTTCA ACAAGGCGAA CAACAAGCCG
TTCAGCATCG CGGCCGACGC GCAGAACACC GACAACCTCG TCAAGATCCT CGCGGAGCCG
AACCTCGTGA CGATCAGCGG TCAGGAAGCG ACGTTCCTCG CGGGCGGCAA GATCTTCATC
CCGATCCCGC AGAGCGGCAG CAACGGCGTC TCGTCGATCA CGCTGCAGGA AGAGGAATTC
GGCGTCGCGC TGAAGTTCAC GCCGACGGTG CTGGCCAACG GCCGGATCAG CCTGAAGGTC
GCGCCGGAAG TGTCGGAACT GTCGCAGACG GGCGTCACGC TGAGCGCGTC CAACATCGGC
GGCACGTCGA TCCTGCCGCT GATCACGACG CGGCGCGCGT CGACGACGGT GCAGATGAGC
GACGGCGAAT CGTTCGCGAT CGGCGGGCTG ATCAAGGACA ACGCGAGCGG TGCGCTGAAG
GCGATCCCCG GCGTCGGCGA AGTGCCGGTG CTCGGCGCGC TGTTCCGCAG CACGTCGTTC
CAGCAGGATC GCACCGAGCT GATCTTCCTG ATCACGCCGC ACCTGGTGAA GCCGCTGCAG
ACCGCGGACG TCGCGCTGCC GACCGACAGC TTCTCGAAGC CGAACGAAGT CGACGTCTTT
GCGACCGGCA ACATGGAAGG CCGTGGCGGC GTGCGCAAGG CAGGCGCGCA GCCGATGCAA
CCCGCGAACG GCGCAGCCGC TCCGCAGACG CCGGCCCAGG CGCCCGCACC TGCTCCGGCG
CCGAAGTCGG AAGCACCGGT CGCGCCGGCC GCGCTGCCCG CACCGCGCAC GCCGCAAGAC
GCCGACGTGC AGCCGCCCGT GCCGGCCGAG CCGCCGAAGG CGCCGGCGCC GGTCGCGGCC
GCCGCCCCGC AGTCCGACGC GGCCACCGCG GCGCGTGTCG CGCGCATCGA AGCCGCCGCC
GCGCGCCTCG CGGCCGCCGG CCCCGAACCG TCGGCCCAGC CGGCGGCGCG ACCGAAGCAC
CGGAGCGCGG CGGCGCCGAA AGCGCAGATT GCGCGCGCCG GCGCGGAACC CCAGTCCACC
GATCGTTGA
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| Protein sequence | MKIKPQRTGT GPLRTRVARG TMMAAILCSG WLTVYGALAQ EGIESAVLTK GGASAPAAVG
KGPMQMTISM APVPAAAPAA SAGPLRGPNC VGAVRESTSV AVPLGKSLLV PMPEPVRNRT
IGNPAVAQAT MVSPQTLYIL GLAVGTTNMI VQGRSGACRV IDVAVGADAG GLQASLLQLM
PNERDIHVST AAGTIVLAGT VSSSQAAQQA VQIAHAYGDS AGDAAGGKQG GGVLNMLNVT
SPQQVMLEVK VAEVSKTLIN QMGSAFNIQG GFGSWSGALV SNLLAGVASG AVFNKANNKP
FSIAADAQNT DNLVKILAEP NLVTISGQEA TFLAGGKIFI PIPQSGSNGV SSITLQEEEF
GVALKFTPTV LANGRISLKV APEVSELSQT GVTLSASNIG GTSILPLITT RRASTTVQMS
DGESFAIGGL IKDNASGALK AIPGVGEVPV LGALFRSTSF QQDRTELIFL ITPHLVKPLQ
TADVALPTDS FSKPNEVDVF ATGNMEGRGG VRKAGAQPMQ PANGAAAPQT PAQAPAPAPA
PKSEAPVAPA ALPAPRTPQD ADVQPPVPAE PPKAPAPVAA AAPQSDAATA ARVARIEAAA
ARLAAAGPEP SAQPAARPKH RSAAAPKAQI ARAGAEPQST DR
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