| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bcen2424_6737 |
|---|
| Symbol | |
|---|
| ID | 4453874 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Burkholderia cenocepacia HI2424 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008544 |
|---|
| Strand | - |
|---|
| Start bp | 980276 |
|---|
| End bp | 981835 |
|---|
| Gene Length | 1560 bp |
|---|
| Protein Length | 519 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 69% |
|---|
| IMG OID | 639698799 |
|---|
| Product | xylose transporter ATP-binding subunit |
|---|
| Protein accession | YP_840359 |
|---|
| Protein GI | 116687112 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG1129] ABC-type sugar transport system, ATPase component |
|---|
| TIGRFAM ID | [TIGR02633] D-xylose ABC transporter, ATP-binding protein |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 13 |
|---|
| Plasmid unclonability p-value | 0.020966 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 10 |
|---|
| Fosmid unclonability p-value | 0.602476 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACGGAAC CCTTGCTGAC GATGCGCGGC ATCGTCAAGG CATTCGACGG CGTGAAGGCG
CTCGACGGCA TCGACCTGAC CGTGCGCCCC GGCGAATGCG TCGGGCTGTG CGGCGAGAAC
GGCGCCGGCA AGTCGACGCT GATGAAGGTG CTGTCGGGTG TGTACCCGCA TGGCACGTGG
GACGGCGAAA TCCGCTGGGA AGGCGCGCCG CTCGCGGCGT CCGGCGTGCG CGACACCGAG
CGCGCGGGCA TCGTGATCAT CCACCAGGAA CTGATGCTCG TGCCCGAACT GTCGGTGGCC
GAGAACATCT TCCTCGGCAA CGAGATCACG CTGCCGGGCG GGCGCATGAA CTTCGCGGCG
ATGGTTCAGC GCGCGGAGGA GCTGCTGCGC GAGCTGCGGA TCGACACGAT CAACGTCGCG
CAGCCGGTGA TGAACTACGG CGGCGGCCAC CAGCAGCTGA TCGAGATCGC GAAGGCGCTG
AACAAGCACG CGAAGCTGCT GATCCTCGAC GAACCGTCGT CGTCGCTGAG TGCGTCGGAG
ACGCGCATCC TGCTCGACAT CGTGCGCGAC CTGAAGCGTC GTGGGGTGGC GTGCGTCTAC
ATCTCGCACA AGCTCGACGA GGTGGCGGCC GTGTGCGACA CGGTCACCGT GATCCGCGAC
GGACGCCACG TCGCGACCGA GCCGATGGCC ACGCTGACCA CCGACCGGAT CATCGCGATG
ATGGTCGGCC GCGAGATCCG CGACCTGTAT CCGCGCGAGC CGCACGAGAT CGGCGACGTC
GTGCTCGACG TGCGCCACGT GACGTGCCGA GACGTGACGA ACGCACGCCG CAAGCGCGTC
GACGACGTGT CGTTCAGCGT GCGGCGCGGC GAGATCGTCG GCGTCGCCGG GCTGGTCGGC
GCGGGCCGCA CCGAGTTGAT GCAGGCGATC TTCGGTGCGT ATCCGGGCGC GTGCACGGCG
AGCGTGACGA TGAACGGCAA GCCGCTGTCG ATCCGCTCGC CGGCCGACGC GATCCGCGCC
GGTATCGCGA TGGTGCCGGA GGACCGCAAG CGCCACGGCA TCGTGCCGCA GCTCGGCGTG
GGCCACAACA TCACGCTCGC GGTGCTGCGG CGCTTCGCGG CGCGCGGGCG GATCGACGCG
GCCGCCGAGC TCGATACGAT CCGCACCGAG ATGCAGCGGC TGTCGGTGCG CGCAGCGCAC
CCGTTCCTGT CGATCGCGAG CCTGTCGGGC GGCAATCAGC AGAAGGCGGT GCTCGCGAAG
ATGCTGCTGA CCGAGCCGCA GGTGCTGATC CTCGACGAAC CGACGCGCGG CGTCGACGTG
GGCGCGAAGG CGGAGATCTA CCGGCTGATC TTCGCGCTGG CCCAGCGCGG TGTCGCGCTG
ATCGTCGTGT CGTCGGAATT GCCGGAGGTG CTCGGCCTGG CCGATCGCGT GCTGGTGATC
GGCGAGGGCG AGCTGCGCGG CGATTTCGTC AACCAGGGCC TCACGCAGGA ACAGATCCTC
GGCGCCGCGC TGAAGCCCGC GCGGCTGGCC GCCGAACCCA CCGCAGCGAG TGCGACATGA
|
|---|
| Protein sequence | MTEPLLTMRG IVKAFDGVKA LDGIDLTVRP GECVGLCGEN GAGKSTLMKV LSGVYPHGTW
DGEIRWEGAP LAASGVRDTE RAGIVIIHQE LMLVPELSVA ENIFLGNEIT LPGGRMNFAA
MVQRAEELLR ELRIDTINVA QPVMNYGGGH QQLIEIAKAL NKHAKLLILD EPSSSLSASE
TRILLDIVRD LKRRGVACVY ISHKLDEVAA VCDTVTVIRD GRHVATEPMA TLTTDRIIAM
MVGREIRDLY PREPHEIGDV VLDVRHVTCR DVTNARRKRV DDVSFSVRRG EIVGVAGLVG
AGRTELMQAI FGAYPGACTA SVTMNGKPLS IRSPADAIRA GIAMVPEDRK RHGIVPQLGV
GHNITLAVLR RFAARGRIDA AAELDTIRTE MQRLSVRAAH PFLSIASLSG GNQQKAVLAK
MLLTEPQVLI LDEPTRGVDV GAKAEIYRLI FALAQRGVAL IVVSSELPEV LGLADRVLVI
GEGELRGDFV NQGLTQEQIL GAALKPARLA AEPTAASAT
|
|---|
| |