Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Bcen2424_6622 |
Symbol | |
ID | 4454774 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Burkholderia cenocepacia HI2424 |
Kingdom | Bacteria |
Replicon accession | NC_008544 |
Strand | - |
Start bp | 850168 |
End bp | 851361 |
Gene Length | 1194 bp |
Protein Length | 397 aa |
Translation table | 11 |
GC content | 65% |
IMG OID | 639698684 |
Product | porin |
Protein accession | YP_840244 |
Protein GI | 116686997 |
COG category | [M] Cell wall/membrane/envelope biogenesis |
COG ID | [COG3203] Outer membrane protein (porin) |
TIGRFAM ID | |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 28 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | 9 |
Fosmid unclonability p-value | 0.446699 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
| |
Sequence |
Gene sequence | ATGAAAACAG CAGTCTGCAC TGCTGCGGTG GCTTGCGCCC TCGCGGCGCC GCTCACGGTC CATGCGCAAA GCTCGGTCAC GTTGTACGGC ATCATCGATA CGGGCATTGC CTGGACGAAT ACGGTCGCGT CGTCGATCAA GGCGCAGGGC GCGTCGCGCT GGTCAATGGC GACCGGCTGG GGCAGCGGTG ACCGCCTGGG TTTCCTCGGA CGCGAGGATC TCGGCGGCGG CCTCTCCGCG GTGTTCCAGC TCGAAGCGGG GTTCAGCGGA TTGAACGGCA CGTCGTCGCA GGGCGGCCGA CTGTTCGGAC GGCAGGCGTA CGTCGGCTTG TCGAGCAAGC AGTACGGCAA GCTGACGCTC GGCCGTCAGT ATGACTACAC GTTCGACTAC GTTGCACCGC TGATGGCATG GCTTCAGTTC GGCAGCATCT ACGGCGCGCA CATCGGGGAC GTGGACGACA GCTTCCAGAC GTTTCGCCTG AACAACAGCG TCAAGTACGA GGTAAGTCCG CTCGCGGGAC TGAAGCTCGG CGCGCTCTAT GCATTCAGCA ACCAGGCGGG CGGCGGCGCC GGCCAAGGCT TCGCCAACAA CCGCGCGTAC GGCTTCGGGC TCGATTACCT GCGCGGACCG TTGCATGTGG TCGCGAGCTA TCTGCAACTG AACAATCCGT CGGCGGGGAT TGCGTCGTCG GGGAATAATC CGAACGGCGC GATCGGCGAC GAGTACAGCG GTTCGACCAG CCTCTTCTAC AACGCGGGCT TCGTCGAGCG TCAGCGCATC TCGGCACTGG GCGCCGGCTA TTCGTTCGGC GCGGCAGCGG TGAACCTGGT CGTCACCGAC ACGCGGCTCG CTTATCGCGG CGGCCACAGC CTGCGCGTCG ACAACTACGA GATCAACGGG CGCTACAACT TCACACCGGT GCTGATCGCG GGGGTCGGCT ACATCTTCAC CGATGGCCAT GGGTATACCG GCAGCGGCGC CACGTCGTTC GCGACCGGCG ACCGGCCGAG ATGGCATCAG GTGGATGCGG GCATCACCTA CCTGCTGTCG AAGCGCACCG ATCTGCACAT GTCGATGGTC TATCAGCGGC GGGCCGGCGA TGCGGGCACC GTTGCGATCA ACTTCTTCGG ACCGGCGGGG GCGGGGCGTA GCAGCCAGAT CGCGGTGCTG GCGGGGCTGC GGCATCGCTT CTAG
|
Protein sequence | MKTAVCTAAV ACALAAPLTV HAQSSVTLYG IIDTGIAWTN TVASSIKAQG ASRWSMATGW GSGDRLGFLG REDLGGGLSA VFQLEAGFSG LNGTSSQGGR LFGRQAYVGL SSKQYGKLTL GRQYDYTFDY VAPLMAWLQF GSIYGAHIGD VDDSFQTFRL NNSVKYEVSP LAGLKLGALY AFSNQAGGGA GQGFANNRAY GFGLDYLRGP LHVVASYLQL NNPSAGIASS GNNPNGAIGD EYSGSTSLFY NAGFVERQRI SALGAGYSFG AAAVNLVVTD TRLAYRGGHS LRVDNYEING RYNFTPVLIA GVGYIFTDGH GYTGSGATSF ATGDRPRWHQ VDAGITYLLS KRTDLHMSMV YQRRAGDAGT VAINFFGPAG AGRSSQIAVL AGLRHRF
|
| |