Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Bcen2424_6534 |
Symbol | |
ID | 4453995 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Burkholderia cenocepacia HI2424 |
Kingdom | Bacteria |
Replicon accession | NC_008544 |
Strand | + |
Start bp | 758953 |
End bp | 760413 |
Gene Length | 1461 bp |
Protein Length | 486 aa |
Translation table | 11 |
GC content | 70% |
IMG OID | 639698597 |
Product | RND efflux system outer membrane lipoprotein |
Protein accession | YP_840157 |
Protein GI | 116686910 |
COG category | [M] Cell wall/membrane/envelope biogenesis [U] Intracellular trafficking, secretion, and vesicular transport |
COG ID | [COG1538] Outer membrane protein |
TIGRFAM ID | [TIGR01845] efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family |
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Plasmid Coverage information |
Num covering plasmid clones | 22 |
Plasmid unclonability p-value | 0.780445 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 14 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGCTACCCA AACCCATCGT TGCCGCGGCG CTGGCCGCCA TCTTGTCGGC GGGGTGTGCC GTCGGTCCCG ACTATGCGCG GCCGGACGTG GCGATGCCGC GGCAGTTCCA GGGGCAGCGC GCCGTGGATC AGCGCCACGC GGCGGCCGAC GCCGATCTCG CGACGTGGTG GACGGGCTTC GGCGATCCGC AATTGACGCG CTACATCACG CTGGCGCTCG CGCAGAACCT CGATCTTGCG CAGGCCGCGG CGCGCGTCGC GCAGGCACGC GCGGGGCTCG GCGCGGCGAA TGCGGCGCTG CTGCCGTCCG GCAATGTGAG CGGCCAGGCC GCACGCGTCT ACCAGTCGGT CGAAACGCCG TTGGGGCAGG TGTTGAATGC GACGCCCGGT TTCGACCGTC ATGGCAACGA CTACGAGGCC GATTTCAACG CGAGCTGGGA GCTGGATATA TTCGGCGGAT TGCGCCGCGG CCGCGAAGCG GCGCTCGCCG ACTATCAGGC CTCCGAAGCG GCGGCGGTCG CGACGCGGCT CGCCGTCGCC GCGCAAACGG CGGATACCTA CATCACGATT CGCGGGTTGC AGGGCCGGCT CGAGGTCGCG CGGCACCAGG TGCAGACCGA GCAGGATCTG CTGTCGACCC TCAACCTGCT CTATGGAAAG GGCCTCGCGG CGGAGCTTCA GGTGCGGCAG GCCGAAGGCG CGCTCGCGCA GGTTCGTGCC ACGGTGCCGG TGCTCGAAGC GGCGCTGGAC GCGGCGATGA ATGCGCTCGA CGTGATGCTC GGCGCGCAGC CCGGCACACA TCGCGCGGAA TTGCTCGACG GCGGCGAGGT ACCGGTCGCG CCGCGGATCG CGGCGACCGG CACGCCCGGC GAACTGCTGC GGCGCCGGCC CGACCTGATC GCCGCCGAGC GGCGCGTGGC GGCGTCGAAT GCACGCATCG GCGTGGCGAT CGCCGAGTAT TACCCGAAGT TCTCGCTGGG CGGGTTGATC GGCAGCGCGA CGACGATGGG CGCGGGCAAC CTGTTTGCCG GCGGCGCGAA CCAGGCTGCG GGCGTGCTCG GCTTGCGCTG GCGTCTGTTC GATTTCGGCC GGATCAATGC GCAGATCGCG CAGGCCAAAG GGCAGGATGC CGAAATGCTG GCTGCGTATC GGCTCGCGGC GCTGCATGCG ACCGAGGACG TCGAGAATGC GTTCTCCGCG CTCGTCAAGC GTGACGAGCA GGCGGCGATT CTCGGTGACG GCGTGAAGTC GCTCGGCCGC GCGCGGGCCG CGTCGTTCGC GGCTTACCAG AAAGGGGTGG TCAGCCTGAT CGAAGTGTTG CAGGCGGACG AAAGCCTGCT GCGCGTATCC GACGAACGCG TGCAGGCGCG AACCGAATCG GCGCGTGCTG CGGTTGCGGC GTTCAAGGCG CTCGGCGGTG GTTGGCAGGC GCCGGAAGCG CAGGCTGTTG CGAGTCGGTA G
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Protein sequence | MLPKPIVAAA LAAILSAGCA VGPDYARPDV AMPRQFQGQR AVDQRHAAAD ADLATWWTGF GDPQLTRYIT LALAQNLDLA QAAARVAQAR AGLGAANAAL LPSGNVSGQA ARVYQSVETP LGQVLNATPG FDRHGNDYEA DFNASWELDI FGGLRRGREA ALADYQASEA AAVATRLAVA AQTADTYITI RGLQGRLEVA RHQVQTEQDL LSTLNLLYGK GLAAELQVRQ AEGALAQVRA TVPVLEAALD AAMNALDVML GAQPGTHRAE LLDGGEVPVA PRIAATGTPG ELLRRRPDLI AAERRVAASN ARIGVAIAEY YPKFSLGGLI GSATTMGAGN LFAGGANQAA GVLGLRWRLF DFGRINAQIA QAKGQDAEML AAYRLAALHA TEDVENAFSA LVKRDEQAAI LGDGVKSLGR ARAASFAAYQ KGVVSLIEVL QADESLLRVS DERVQARTES ARAAVAAFKA LGGGWQAPEA QAVASR
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