| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bcen2424_6401 |
|---|
| Symbol | |
|---|
| ID | 4454048 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Burkholderia cenocepacia HI2424 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008544 |
|---|
| Strand | + |
|---|
| Start bp | 601938 |
|---|
| End bp | 603860 |
|---|
| Gene Length | 1923 bp |
|---|
| Protein Length | 640 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 69% |
|---|
| IMG OID | 639698464 |
|---|
| Product | AMP-dependent synthetase and ligase |
|---|
| Protein accession | YP_840024 |
|---|
| Protein GI | 116686777 |
|---|
| COG category | [I] Lipid transport and metabolism |
|---|
| COG ID | [COG0365] Acyl-coenzyme A synthetases/AMP-(fatty) acid ligases |
|---|
| TIGRFAM ID | [TIGR01217] acetoacetyl-CoA synthase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 16 |
|---|
| Plasmid unclonability p-value | 0.172099 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 18 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAGCACCA CTGACATACT TTGGCAACCA CCGTCCGACT GGCGGACCAG CACGCTGCTA
GGTGAACTCT GCGCGTGCCT GGGCGCATCG TCGTTCGAAG AACTGATCGG GATTTCGCTG
CGTGAGCCGC AACGCTACTG GGCCGCGGTG ATGACGCACC TGCAATTCCA GTGGCGAACG
CCGCCGCAGC GGCATGTCGA CCTGGCGGGC GGCCCCGCGT TTCCGCGATG GTTTCCCGGC
GGTCGACTGA ACTGGGTCGA TCATGTGCTT GCGCACGCGG ACGGTCCACG CGCGATGCAG
GCGGCAGTCA TCACGGAAAC GGAGGACGGA CGCGTCAGCA CGACCAGCTA TGCCGCGCTG
GCTCGGGAAG TACGGCGCCT GGCTTCGCGG CTCGCCACGC TTGGCGTCGG TGCAGGCGAT
CGGGTCGGCA TCATGATGAC GATGGGGGCG CAGGCCGCGG CCAGCCTGAT TGCCGTATCG
GCGCTCGGTG CGATCGCCGT GCCGCTGTTC ACCGGCTTCG GGGCGGACGC CGTCGCCGCG
CGACTGACGC TGGCCGACGC GCGTGTGTTG CTGGCGAGCG GCGGCTACCT GCGCCGCGGA
CGCACCATCG ACCTGAAACC CGTGTTCGAC GCCGTGCAAG AACAGATGCC GGGTTTGCGC
ATCGTCGTCC ACGGCGACGA GCCGGCGCGT TCCGCCGCCC TCGACGACCC GGCTTCCGCG
CACGCGGCGG CGCCCCGCGC GTTTCCCGCG CAGGACCCGG ACCAGCCGTT CATGATCGTT
TTCACGTCCG GCACGACGGG GGAGCCGAAG GGCACGGTGC ACACGCATGC CGGGTTCCCG
TTGAAGATCC TGCACGATTG TGCGTACCAC TTCGAGTTGC GCCCCGGCGA TCGCTGCCTG
TGGCCGAGCG ACATGGGCTG GATCGTCGGC CCGCTCACGA CGGTCGGCGC GCTCGTCCGC
GGCGCGACCC TGGTGTGCTA CGACGGCGCG CCCGACCATC CGGGCGCCGG ACGTCTGGCC
GAAATCATCG ACCGCCACCA GGTCACGCAT TTCGGCGCAT CGCCCACGCT GATCCGCAGC
CTGGCGGCGT CGCCGGATGC CGTCGACGGC GCGGTGCTGG AGAGCCTGCG TGTGCTGATG
GTGGCCGGCG AGGTGATCGA CCCGGATCAC TTCGCGTGGT TCTTCCATGC ATTCGGCCGG
GCGCGGTTGC CGGTGATCAA CTACAGCGGC GGCACGGAGG CGTCGGGCGC GCTGTTGGGC
AATGTTCCCG TGCGCCCGAT CCGTGCCTGC GCTTTCAACG CCGTATCGCC GGGCGTCGAC
GCGTTTGCCG CCGACGAGAA AGGGCAGCGC GTGCGTGGCG TTCCCGGTGA ACTGGTGATC
GCCGCGCCTT TCGTCGGGAT GACGTCGGGA TTCTGGAACG CGGCCGACCG CTACGAGGAA
ACGTACTGGC GCCAGCGGCC GGGCCTGTGG ACGCATGGCG ACCTGTTGCT CGAAGACGAT
GACGGACAAT TCTTCATCCT CGGCCGCGCG GACGACACGC TGAAGATTGC CGGCAAGCGG
CTGGGGCCGG CCGAGGTCGA GTCGGTCGTG CTCGGGTCGC CGCTCGTGCG CGACGTGGCG
GCCGTCTCGC TGCCCGATCC GGTGAAAGGG GAGCGGCTGG TGGTTTGCGT CAGTACCCAC
GGCGAACCGC CGAGCGTGCT GGTGAAGTCG CTGGCCGATC GGATCGAGGC GGCGCTGGGA
AAACCGTTCC GTCCCGGCGT CGTGCATGTC GTGCCCGATC TGCCGCGCAC GCGCAACGGG
AAGGTCATGC GCCGCGTGGT GCGAAACGTG TTGCGGGGCT TGCCGCCGGG CGACGTGAGC
GCCCTCGAGA ATCCGGCGGC GCTTGCAGCG TTGCAGGCGC TGGCCGATCA GGGCACGGCA
TGA
|
|---|
| Protein sequence | MSTTDILWQP PSDWRTSTLL GELCACLGAS SFEELIGISL REPQRYWAAV MTHLQFQWRT
PPQRHVDLAG GPAFPRWFPG GRLNWVDHVL AHADGPRAMQ AAVITETEDG RVSTTSYAAL
AREVRRLASR LATLGVGAGD RVGIMMTMGA QAAASLIAVS ALGAIAVPLF TGFGADAVAA
RLTLADARVL LASGGYLRRG RTIDLKPVFD AVQEQMPGLR IVVHGDEPAR SAALDDPASA
HAAAPRAFPA QDPDQPFMIV FTSGTTGEPK GTVHTHAGFP LKILHDCAYH FELRPGDRCL
WPSDMGWIVG PLTTVGALVR GATLVCYDGA PDHPGAGRLA EIIDRHQVTH FGASPTLIRS
LAASPDAVDG AVLESLRVLM VAGEVIDPDH FAWFFHAFGR ARLPVINYSG GTEASGALLG
NVPVRPIRAC AFNAVSPGVD AFAADEKGQR VRGVPGELVI AAPFVGMTSG FWNAADRYEE
TYWRQRPGLW THGDLLLEDD DGQFFILGRA DDTLKIAGKR LGPAEVESVV LGSPLVRDVA
AVSLPDPVKG ERLVVCVSTH GEPPSVLVKS LADRIEAALG KPFRPGVVHV VPDLPRTRNG
KVMRRVVRNV LRGLPPGDVS ALENPAALAA LQALADQGTA
|
|---|
| |