Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Bcen2424_6180 |
Symbol | |
ID | 4453909 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Burkholderia cenocepacia HI2424 |
Kingdom | Bacteria |
Replicon accession | NC_008544 |
Strand | + |
Start bp | 342740 |
End bp | 344236 |
Gene Length | 1497 bp |
Protein Length | 498 aa |
Translation table | 11 |
GC content | 72% |
IMG OID | 639698240 |
Product | RND efflux system outer membrane lipoprotein |
Protein accession | YP_839805 |
Protein GI | 116686558 |
COG category | [M] Cell wall/membrane/envelope biogenesis [U] Intracellular trafficking, secretion, and vesicular transport |
COG ID | [COG1538] Outer membrane protein |
TIGRFAM ID | [TIGR01845] efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family |
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Plasmid Coverage information |
Num covering plasmid clones | 16 |
Plasmid unclonability p-value | 0.0879819 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 13 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAAGCGGC ACGGTCTGCG CATCGCGGCG ACGCTCGCTC CGCTTGCACT CGCACTCAGT GCGTGCAAGT CGGTCGGCCC CGACTACAAG TTGCCGCAGC ACGCGTACGT CAATGCGCCG CTGGCGAACC ATGCGCTCGA CGACGCGAAC GGCGCGCTGG TGTCGCGCGA CGCGGTGCCC GGCAACTGGT GGCAGCTGTA CGACGACCCG GTACTCGACG GGCTCGTGCG CGATGCGCTG AAGTCGAACA CCGACCTGCG CGTCGCCGCG GCCAACCTCG CCCGCTCGCG CGCGGCGCTG GTCGTCGCGA ACGAACAGGG CGGCTTCTCG GGCAGCGCGG AAGCGGCCGT GCAGCGCGCG CAGGAATCGG CCGAGCAATA CCTGCTCGAA AACAAGCTGC CGGTCGTCAA CGAAGGCACG GTCGGCATCA ACGTGTCGTA CGAGCTCGAC CTGTTCGGCA AGCTGCGGCG CGGCGTCGAA GCCGCGCGCG CGGACAGCGA GGCCGTCAAG GCGGCCGGCG ACCTGGCACG CATCACCGTC GTGGCCGACG TCGTGCGCGC GTACGTCGAA GCGTGCTCGG CCGGCGACGA ACTGGCGATC GCGAAGCAGT CGCTCGCGCT GCAGCAGCAG CGCGTGAAAC TGTCGCAACG ACTGCGCGAT GCCGGACGCG GCAACCAGAC CGACGTGACC CGCGGCGTCA CGCAGGTGCG CACGCTCTCC GCCGACATTC CGCGCTTCGA AGGCCGCCGC AAGGTCGCGC AGTACCAGCT CGCCGCGCTG CTCGCGCGCG CGCCGGCCGA CCTGCCGAAA GCCGCCGCCG AGTGCGAACG CCTGCCGAAG CTGCGTCAGC CGATTCCGAT CGGCGACGGC GCCGCGCTGC TGCGCCGCCG CCCCGACGTG CGCGAGGCCG AGCGGCAGCT CGCCGCCGCG ACCGCGCGGA TCGGCGTGGC GACCGCCGCG CTGTACCCGT CGGTCAGCAT CGGTGCGTCG GCCGGCTCGA TCGGCGTCGC CGCCGACCTG TTCTCGTCCA CCACGAATCG CTGGTCGTTC GGTCCGCTGA TCAGCTGGTC GTTCCCGGTC AACGGCCAGC GTGCGCGCGT GCGCGAAGCC GAAGCCGCGA CGGGCGGCGC ACTCGCGCAC TTCGACGGCG TCGTGCTGAA TGCGTTGCGC GAAACGCAGT CGAGCCTTGC GACCTACGCG GCCGACGTGC AGCGCACGGA CGCGCTGCGC ACCGCGTACG AGTCGGCCCG CAATTCCGCC GACGAAACCC ATCGTCTCTA TGCGGCCGGC CGCGAATCGT TCATTTCCGA TCTCGACGCG ACGCGCACGT TGACGAGTGT GCGGGCGCAG GTCGCGGCGG CCGAAGGTCA GGTCGCGGCC GACCAGGTGC GGCTCTTTCT CGCGCTCGGC GGTGGATGGG ACGGTGACGG TGCGGCAGCC GCCGCGGACG CCGGCTCCGC GGCCACGGCG CCCGCGGCCG GCCAGTCGAC GCCGTAG
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Protein sequence | MKRHGLRIAA TLAPLALALS ACKSVGPDYK LPQHAYVNAP LANHALDDAN GALVSRDAVP GNWWQLYDDP VLDGLVRDAL KSNTDLRVAA ANLARSRAAL VVANEQGGFS GSAEAAVQRA QESAEQYLLE NKLPVVNEGT VGINVSYELD LFGKLRRGVE AARADSEAVK AAGDLARITV VADVVRAYVE ACSAGDELAI AKQSLALQQQ RVKLSQRLRD AGRGNQTDVT RGVTQVRTLS ADIPRFEGRR KVAQYQLAAL LARAPADLPK AAAECERLPK LRQPIPIGDG AALLRRRPDV REAERQLAAA TARIGVATAA LYPSVSIGAS AGSIGVAADL FSSTTNRWSF GPLISWSFPV NGQRARVREA EAATGGALAH FDGVVLNALR ETQSSLATYA ADVQRTDALR TAYESARNSA DETHRLYAAG RESFISDLDA TRTLTSVRAQ VAAAEGQVAA DQVRLFLALG GGWDGDGAAA AADAGSAATA PAAGQSTP
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