| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bcen2424_6074 |
|---|
| Symbol | |
|---|
| ID | 4454350 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Burkholderia cenocepacia HI2424 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008544 |
|---|
| Strand | + |
|---|
| Start bp | 222401 |
|---|
| End bp | 223795 |
|---|
| Gene Length | 1395 bp |
|---|
| Protein Length | 464 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 72% |
|---|
| IMG OID | 639698134 |
|---|
| Product | RND efflux system outer membrane lipoprotein |
|---|
| Protein accession | YP_839699 |
|---|
| Protein GI | 116686452 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis
[U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG1538] Outer membrane protein |
|---|
| TIGRFAM ID | [TIGR01845] efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 25 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 12 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAAGTTCG TTCGACTCGT GGCCGCGCTG TCCGCGGCGG CCGTCCTGAC CGCGTGCACG
AGCGCGCCGG TCGCCACCGT CACCCCGCCG CCGCTGGCCG CGACCTATGC GAACGCGGAT
CTCGCGGCCG GCGGCCCGGC CGCCGACACC GGTGCGTGGT GGCATGGCTT CCACGACCCG
ATCCTGGACC GGCTGGTCGA CACCGCGCTC GCGAACAACC TCGACCTGCA GGCGGCCGTC
GCACGCATCG ACGCGGCCCG CGCGGTACGG ATCGGCGCGG CGTCGCAATG GTTTCCGTCC
GTCGACCTGA ATGCCGGTGC CAGCCGTCAG CGGCTGTCCG CATCGCAGGC GTTCCCGACC
GATACGCCGA CGACCGGCAA CGCGTTCGAC CTGAATGCGA GCCTCGCATG GGAAATCGAC
ATCTTCGGCC GCATCCGCCA GGGTGTGTCG GCAGCCGACG CGGATATCGC ATCCGCGCAA
AACGATGCGG CGGCCGTGCG GATCGCGACG ATCGACGAAA CCGTGCGCAC CTACGTGACG
GTGCGCGGCC TCGAACAGCG GCTCGCGCTG GTCGAGGCCA ACGCGTTGAG CCAGCGCGGC
ACCGAGGAAT CGACACGGCG CCTGTTCGAC GCGGGCGTCG TGCCGATCGC CGACGTCGAC
CGCGCCGCCG CGCAGACGGA AACGACGCTG GCCGAGCTGC CTGCGCTGCA ACTGCAGCGG
CAGGCCGCGA TCCACCAGCT GTCGATCATC ACCGCGTCGA CACCGCAGGA CATCTATGCG
CGGCTCGACC CGCCCGCGCC CGAGCCGGTG TGGACCGCCG CCGCGCCGGG CATCGGCACG
CCGGCCGACC TGCTGCGCCG GCGGCCCGAC GTGCGCGCGG CCGAGGCACG CGTCGTCGCG
GCCTATGCGC GCATCGGCGT CGCCGAGGCC GACCTGAAGC CGCACCTGCA ACTGATCGGC
GTGATCGGTG CGGCGATCGA CGGTTTCTCG GGCGCGTCGC TCGCGCGTTC GCTCGCATGG
ATGGCCGGCG CCGGCGCGAG CGCGCCGCTG TTCGACGGCG GCCGGCGCCG CAGTGTCGTC
GCGTTGCGGC GCGCGCAGGC CGACCAGGCG CTCGCCGCCT ATCGCACGGC CGTGCTGACG
GCCGTCGGCG ACGTCGAGAC GTCGGTGGCC GCGACCGCCC GAAATCACGG CCGGACCGAA
CGCCTCGAGC GCGCGGTATC GAATGCACGG GGTGCGTATA CGCAGATCAA CCGGTCGTGG
CGCAGCGGCG AATCGGCGTT CATCGATACG CTGGAAGTGC AGCGCGCGCT GCTCGCGGCC
GAGGATTCGC TCGCACGGGC GCGCACCGAG GAAACGCTGA GCCGGGTCAG GCTGATGAGT
GCGCTGGGGC AGTAA
|
|---|
| Protein sequence | MKFVRLVAAL SAAAVLTACT SAPVATVTPP PLAATYANAD LAAGGPAADT GAWWHGFHDP
ILDRLVDTAL ANNLDLQAAV ARIDAARAVR IGAASQWFPS VDLNAGASRQ RLSASQAFPT
DTPTTGNAFD LNASLAWEID IFGRIRQGVS AADADIASAQ NDAAAVRIAT IDETVRTYVT
VRGLEQRLAL VEANALSQRG TEESTRRLFD AGVVPIADVD RAAAQTETTL AELPALQLQR
QAAIHQLSII TASTPQDIYA RLDPPAPEPV WTAAAPGIGT PADLLRRRPD VRAAEARVVA
AYARIGVAEA DLKPHLQLIG VIGAAIDGFS GASLARSLAW MAGAGASAPL FDGGRRRSVV
ALRRAQADQA LAAYRTAVLT AVGDVETSVA ATARNHGRTE RLERAVSNAR GAYTQINRSW
RSGESAFIDT LEVQRALLAA EDSLARARTE ETLSRVRLMS ALGQ
|
|---|
| |