| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bcen2424_6062 |
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| Symbol | |
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| ID | 4454338 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Burkholderia cenocepacia HI2424 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008544 |
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| Strand | + |
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| Start bp | 207284 |
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| End bp | 209347 |
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| Gene Length | 2064 bp |
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| Protein Length | 687 aa |
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| Translation table | 11 |
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| GC content | 69% |
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| IMG OID | 639698122 |
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| Product | squalene-hopene cyclase |
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| Protein accession | YP_839687 |
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| Protein GI | 116686440 |
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| COG category | [I] Lipid transport and metabolism |
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| COG ID | [COG1657] Squalene cyclase |
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| TIGRFAM ID | [TIGR01507] squalene-hopene cyclase
[TIGR01787] squalene/oxidosqualene cyclases |
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Plasmid Coverage information |
| Num covering plasmid clones | 22 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 12 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGATCCGCC GCATGAACAA ATCGGCCCCC TCTTCCTGGT CCGCGCTCGA CGCTGCCATC
GCCCGTGGAC GCGACGCACT CGTGCGCCTT CAGCAGCCCG ACGGCAGCTG GTGTTTCGAA
CTCGAATCCG ACGCGACGAT CACCGCGGAA TACATCCTGA TGATGCATTT CATGGACAGG
ATCGACGACG TGCGCCAGGA GAAGATGGCA CGCTACCTGC GCGCGAACCA GCGGCTCGAC
ACGCACGGCG CCTGGGATCT GTACGTCGAC GGCGCACCGG ACGTGTCGTG CAGCGTGAAG
GCGTACTTCG CGCTGAAGGC GGCCGGCGAC AGCGAACACG CGCCGCACAT GATCCGCGCG
CGCGACGCGA TCCTGAAGCT CGGCGGCGCG GCCCGTTCGA ATGTGTTCAC GCGCATCCTG
CTCGCGACGT TCGGCCAGGT GCCGTGGCGC GCGGCGCCGT TCATGCCGGT CGAATTCGTG
CTGTTCCCGA AGTGGGTGCC GATCTCGATG TACAAGGTCG CGTACTGGGC GCGCACGACG
ATGGTGCCGC TGCTGGTGCT GTGCTCGCTG AAGGCGCGTG CGCGCAATCC GCGCAACGTG
TCGATCCGCG AGCTGTTCGT CACGCCGCCC GAACAGGAGC GCCACTACTT CCCGCCCGCG
CGCGGCATGC GCCGGCTGTT CCTCGCGCTC GACCGCACGA TCCGCCCTAT CGAGCCGCTG
CTGCCGAAGC GCTTGCGGCA GCGCGCGATC CGGCATGCGG AAGCGTGGTG CGCGGAACGG
ATGAACGGCG AGGACGGGCT CGGCGGCATC TTCCCGCCGA TCGTGTACAG CTACCAGATG
ATGCAGGTGC TCGGCTACCC GGACGACCAT CCGCTGCGGC GCGATTGCGA GAACGCGCTG
GAGAAGCTGC TGGTCACGCG GCCGGACGGC AGCATGTACT GCCAGCCGTG CCTGTCGCCG
GTGTGGGACA CCGCGTGGAG CACGATGGCG CTCGAGCAGG CGCGCGGCGT CGCGGCGCCG
GAAACCGGCG ACACGGCTTC CGGCGCACTG CGCGATCTCG ACGGGCGCAT CGCTCGCGCG
TACGACTGGC TGGCCACGCG CCAGGTGAAC GACCTGTGCG GCGACTGGAT CGAGAACGCC
CCGGCCGATG TCGAACCGGG CGGCTGGGCA TTCCAGTATG CGAACCCGTA CTACCCGGAC
ATCGACGACA CGGCGCTCGT CACCGCGATG CTCGATCGCC GCGGCCGCAC GCATCGCGCC
GCGGACGGCA CGCACCCGTA CGCGTCGCGC GTCGCACGCG CGCTCGACTG GATGCGCGGG
CTGCAATCGC GCAACGGCGG CTTCGCGGCG TTCGACGCGG ACTGCGACCG CATGTATCTG
AACGCGATTC CGTTCGCCGA TCACGGCGCG CTGCTCGACC CGCCGACCGA GGACGTATCG
GGCCGCGTGC TGCTGTGCTT CGGCGTGACG AAGCGCGCCG CAGACCGCGC GTCGCTCGCC
CGCGCGATCG ACTACGTGAA GCGCACGCAG CAGCCCGACG GCAGCTGGTG GGGCCGCTGG
GGCACGAACT ACCTCTACGG CACGTGGAGC GTGCTGGCCG GCCTCGCGCT CGCCGGCGAG
GACAAGTCGC AGCCCTACAT CACCCGCGCG CTCGACTGGC TGCGCGCGCG GCAGCACGCG
GACGGCGGCT GGGGCGAGAC CAACGACAGC TACCTCGATC CGAAGCTGGC CGGCACGAAC
GGCGGCGAGA GCACGTCGAA CTGCACCGCG TGGGCGCTGC TCGCGCAGAT GGCGTTCGGC
GACTGCGAAT CCGATTCGGT GAAGCGCGGC ATCGCGTATC TGCAGTCGGT GCAGCAGGAA
GACGGCTTCT GGTGGCACCG CTCGCACAAT GCGCCGGGCT TTCCGCGCAT CTTCTATCTG
AAGTATCACG GCTATACCGC TTACTTCCCG CTGTGGGCGC TCGCGCGTTA TCGGCGGCTG
GCAGGGGCGA AGGATGCGGG CGCAACCAGG TCGTGCGCGT CCGGTGCGTC CGCCGCACCC
GCAACGGACG ACGCGCTCGC CTGA
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| Protein sequence | MIRRMNKSAP SSWSALDAAI ARGRDALVRL QQPDGSWCFE LESDATITAE YILMMHFMDR
IDDVRQEKMA RYLRANQRLD THGAWDLYVD GAPDVSCSVK AYFALKAAGD SEHAPHMIRA
RDAILKLGGA ARSNVFTRIL LATFGQVPWR AAPFMPVEFV LFPKWVPISM YKVAYWARTT
MVPLLVLCSL KARARNPRNV SIRELFVTPP EQERHYFPPA RGMRRLFLAL DRTIRPIEPL
LPKRLRQRAI RHAEAWCAER MNGEDGLGGI FPPIVYSYQM MQVLGYPDDH PLRRDCENAL
EKLLVTRPDG SMYCQPCLSP VWDTAWSTMA LEQARGVAAP ETGDTASGAL RDLDGRIARA
YDWLATRQVN DLCGDWIENA PADVEPGGWA FQYANPYYPD IDDTALVTAM LDRRGRTHRA
ADGTHPYASR VARALDWMRG LQSRNGGFAA FDADCDRMYL NAIPFADHGA LLDPPTEDVS
GRVLLCFGVT KRAADRASLA RAIDYVKRTQ QPDGSWWGRW GTNYLYGTWS VLAGLALAGE
DKSQPYITRA LDWLRARQHA DGGWGETNDS YLDPKLAGTN GGESTSNCTA WALLAQMAFG
DCESDSVKRG IAYLQSVQQE DGFWWHRSHN APGFPRIFYL KYHGYTAYFP LWALARYRRL
AGAKDAGATR SCASGASAAP ATDDALA
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