| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bcen2424_5969 |
|---|
| Symbol | |
|---|
| ID | 4454697 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Burkholderia cenocepacia HI2424 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008544 |
|---|
| Strand | + |
|---|
| Start bp | 105218 |
|---|
| End bp | 106135 |
|---|
| Gene Length | 918 bp |
|---|
| Protein Length | 305 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 68% |
|---|
| IMG OID | 639698030 |
|---|
| Product | LysR family transcriptional regulator |
|---|
| Protein accession | YP_839595 |
|---|
| Protein GI | 116686348 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG0583] Transcriptional regulator |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 27 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 3 |
|---|
| Fosmid unclonability p-value | 0.0037011 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | ATGCTGACGT TCAAGCAGAT GGAAGCGCTG TACTGGATCG TGCAGCTCGG CTCGTTCGAC
GCGGCCGCGA CGCGCCTGAA CACGACGCAG TCGGCCGTAT CGAAGCGCAT CCAGGAGCTC
GAACGCGCGT TCGACCTCAC CGTGTTCGAT CGCGCGCATC GCAGCGCGCG GCTCACCGAC
AAGGGCGCGG AGCTGTTCGA CCATGCGAAG GCATTGCTCG AACAGCGCGA CCGCGTGGTC
GAGCGGATGA GTTCGAAGGA AGCGCTGGTG CGGCATGTCC GGATCGGCGT GACCGAACTG
ACCGCGCTGA CGTGGCTGCC GCGCCTGATC GCGGCGATCC AGGCCGCCTA TCCGCGCGTG
CACGTGGAGG CCGAGGTGGA CCTGACCGCG ACGCTGCGCG ACCGGCTCGC GGCCGACACG
ATCGATCTGA TCGTGGTCCC GCAGATTCAT GCGACGGACG CGTTCACGGC GACGGTGGTC
GGCGAGGTCG ACAACGCGTG GATGTGCGCG GCCGGATTCA TGCCGACGTC CCGGGCCGCC
CTTGCGTTGA CGGACATCGC GCGGTTTCCG CTGATCCTGC AGGGGAACCT GTCGGGCACC
GGGCATCTGT ACACGCGCTT TCTGCAGGAA CACGGCGTCG CGACTCAGCG CGTGCTGTCG
AGCAACAGCC TGCTCGCGCA GATCGGCCTG ACGCTGTCGG GCCTGGGCAT CAGCTATCTG
CCGAAGGCGT GCGTCGCGCA CCTCGTCGCT TGCGACGCGC TGGAGATCGT GCGCACGCAG
CCGGCGCTGC CGCCGGTTCG CTACGTCGCG CTGCACCGGG CCGAACGCGC TCAATCGCTG
ACCGCCGAGA TCGTCCGGCT CGCGGAGCAA GCGTGCGATT TCAGCACGAG CCTGCTGGAC
CCGCGGGCGC ACGACTAG
|
|---|
| Protein sequence | MLTFKQMEAL YWIVQLGSFD AAATRLNTTQ SAVSKRIQEL ERAFDLTVFD RAHRSARLTD
KGAELFDHAK ALLEQRDRVV ERMSSKEALV RHVRIGVTEL TALTWLPRLI AAIQAAYPRV
HVEAEVDLTA TLRDRLAADT IDLIVVPQIH ATDAFTATVV GEVDNAWMCA AGFMPTSRAA
LALTDIARFP LILQGNLSGT GHLYTRFLQE HGVATQRVLS SNSLLAQIGL TLSGLGISYL
PKACVAHLVA CDALEIVRTQ PALPPVRYVA LHRAERAQSL TAEIVRLAEQ ACDFSTSLLD
PRAHD
|
|---|
| |