| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bcen2424_5843 |
|---|
| Symbol | |
|---|
| ID | 4452731 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Burkholderia cenocepacia HI2424 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008543 |
|---|
| Strand | + |
|---|
| Start bp | 2973363 |
|---|
| End bp | 2974121 |
|---|
| Gene Length | 759 bp |
|---|
| Protein Length | 252 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 70% |
|---|
| IMG OID | 639697904 |
|---|
| Product | short-chain dehydrogenase/reductase SDR |
|---|
| Protein accession | YP_839469 |
|---|
| Protein GI | 116693936 |
|---|
| COG category | [I] Lipid transport and metabolism
[Q] Secondary metabolites biosynthesis, transport and catabolism
[R] General function prediction only |
|---|
| COG ID | [COG1028] Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 22 |
|---|
| Plasmid unclonability p-value | 0.163211 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 15 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAAACTGG ACAGCTACGC CGGCCAGGCC GTGATGATCA CCGGCGCCGC GAGCGGCTTC
GGCGCGCTGC TCGCGAGCGA ACTCGCCGCG ATGGGCGCGC GGCTCGCGCT CGGCGACCTG
AACGGCGATG CGCTCGAACG CGTGGCCGCG CCGCTGCGCG CGGCCGGCGC CGACGTGATC
GCGCAGCGCT GCGACGTGCG CGTCGAAACG GAGGTCGCCG CGCTGGTGCA GGAAGCCGTC
GCGCGATTCG GGCGGCTCGA CGTCGGCATC AACAACGCGG GCATCGCGCC GCCGATGAAG
GCGCTGATCG ACACCGACGA AGCCGATCTC GACCTGAACT TCGCGGTGAA CGCCAAGGGC
GTGTTCTTCG GGATGAAGCA CCAGATCCGC CAGATGCTCG CGCAGCGCGA AGGCGTGATC
CTGAACGTCG CGTCGATGGC CGGGCTCGGC GGCGCGCCGA AGCTGGCCGC GTATGCGGCG
TCGAAACATG CGGTGGTCGG GCTCACGAAG ACGGCCGCCC TCGAATACGC GCGCCACGGC
ATCCGCGTGA ATGCGGTGTG CCCGTTCTAC AGCACGACGC CGATGGTCAC CGACAGCGAG
ATCGGCGAGC GCCAGGATTT TCTGGCGCAG GGCTCGCCGA TGAAGCGGCT CGGCCGGCCC
GACGAAATCG TCGCGACGAT GCTGATGCTG TGCGCGAAGG ACAACACGTA TCTGACCGGG
CAGGCCGTCG CCGTCGACGG CGGCGTCTCG GCCTTCTGA
|
|---|
| Protein sequence | MKLDSYAGQA VMITGAASGF GALLASELAA MGARLALGDL NGDALERVAA PLRAAGADVI
AQRCDVRVET EVAALVQEAV ARFGRLDVGI NNAGIAPPMK ALIDTDEADL DLNFAVNAKG
VFFGMKHQIR QMLAQREGVI LNVASMAGLG GAPKLAAYAA SKHAVVGLTK TAALEYARHG
IRVNAVCPFY STTPMVTDSE IGERQDFLAQ GSPMKRLGRP DEIVATMLML CAKDNTYLTG
QAVAVDGGVS AF
|
|---|
| |