| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bcen2424_5567 |
|---|
| Symbol | |
|---|
| ID | 4451964 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Burkholderia cenocepacia HI2424 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008543 |
|---|
| Strand | - |
|---|
| Start bp | 2676028 |
|---|
| End bp | 2677725 |
|---|
| Gene Length | 1698 bp |
|---|
| Protein Length | 565 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 63% |
|---|
| IMG OID | 639697628 |
|---|
| Product | phage integrase family protein |
|---|
| Protein accession | YP_839193 |
|---|
| Protein GI | 116693660 |
|---|
| COG category | [L] Replication, recombination and repair |
|---|
| COG ID | [COG4974] Site-specific recombinase XerD |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 30 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 13 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAAAACGC GTCAGTTCCA TGCCACTGCC GACGAAGCCA CGCTCGACTT TCCGGACGAG
GCGGAGCTTG CCGCGCTACG GAGCTGGTAC GCCGGTCTGG AGGCGCGAGC CGCTGTCTCT
CGTTACCTGA GCGAACGGCG GGCAACTGGC GCATCGTCGC GTAGCATCCT CGGGCGCATT
CGCCGGCGAC TCGTGGCGTT TGCTCGAGCG CGTCATCGCG AGGATCTCGC GATCGCGTTC
GTCGATCGTC CTTCTCAAGC CGTGGTAGAC GCTGTCGTCC AGGCCATCGA TGTACTGCGT
CATCTACCTG TTCCCCAGCC GCACATCTCG GATGAAATTG GCGAATGGCT GCCGCCACGT
GTCGTGGTGT CCCTGCAGGC GCACGGGATC AGAACGCTTG CAGACCTGAC CGTCCGAATT
CCGCGTCGGA GCCGCTGGTG GTCGACGATC GACGGTCTTG GGGCCGCCGG CGCGCGGCAC
GTTGAAGCGT TTTTTGCTGC GTACCCGGCC TTGACCGAAC GAGCCCGCAC GTTGATCGCC
GCGGTACCGT CCGGAAACAT CGTTCCGTGG GAGCGAATGC ACGTGCCGCA TGAGGTTAAC
GGCACGCGTG GAAAGTTTCG GGCACCGCAG GAGGCCTGCT TGCTGAGCGC ATCGAATGAC
TACGAGGCCG TCCTCTCCTG GTTGTCGCTG CATGAATCAG CGGATACGCA ACGTGCCTAC
AGGAAAGAAG CCGAGCGGCT GATCCTGTGG GCGATCGTCG AGCGCGGTCG AGCATTGTCG
TCGCTCACGA CGGATGACGC GATTGCGTAT CGCGGCTTCT TGCGTCGGCC GACACCGCGG
GAGCGTTGGG TGGGGCCGCC TCGGCCACGA CAGAGCGTCG AGTGGCGGCC GTTTAACGGT
TCCCTATCAG CTCGGTCGAC AGCGCATGCG TTGACGGTGC TATCCGCAAT GTTTCGTTGG
CTGGTTGAGC AGCGCTATGT TCAGGCGAAC CCATTTGCTG GCGTCAAGGT GCGAGGTGGC
GTGTTGCATA CGGGACTGGA CGTCTCGCGG GGCTTTACGG AGGGCGAGTG GTTGTTGATC
CGCACACTGG CCGACGGGCT TGAATGGTCA TACGGCTGGA GCGAGCCAGC TGCTCAGCGC
TTACGCTTTC TACTGGACTT CGGCTACGCG ACGGGGCTGC GCGCCGGCGA ACTGGTTGGC
GCCAAGCTGG GCGATATCCG CCGCGACGAA CATGGCGATC ACTGGCTGCA TGTGATCGGG
AAGGGCGGGA GGCCCGGTAA GGTTGCGTTA CCGACACTGG CGCGAACCGC GTTGGATTTT
TGGCTCATGC AGCGCGGGTT GCCGGTGACG CCATCTCGTT GGATTCCTTC TACTCCGCTC
GTTTCAAGTC TTGAGGAAGA CGCTGCCGGC ATTCAGAGTA CCCGTCTTTG GAGGGTGATC
CGCCGCTTTT TCCTGCTGGT GGCCGGTGCG ATCGAGGGGG AACAGCCGGC GACCGCCGAG
AAATTGCGCC GCGCGAGCCC GCATTGGATA CGCCATACAC ATGCCACGCA TGCGTTGGCG
CGTGGCGCGG AACTGATCAT GGTGCGCGAC AATCTGCGGC ATGCGTCAAT TTCGACAACG
TCGACCTACT TGCATAGTGA CGAGGCGCAA AGGGCGCGGC AGTTTGACCG GGCGTTTTGC
TCCAGGAGTT CGAAATAA
|
|---|
| Protein sequence | MKTRQFHATA DEATLDFPDE AELAALRSWY AGLEARAAVS RYLSERRATG ASSRSILGRI
RRRLVAFARA RHREDLAIAF VDRPSQAVVD AVVQAIDVLR HLPVPQPHIS DEIGEWLPPR
VVVSLQAHGI RTLADLTVRI PRRSRWWSTI DGLGAAGARH VEAFFAAYPA LTERARTLIA
AVPSGNIVPW ERMHVPHEVN GTRGKFRAPQ EACLLSASND YEAVLSWLSL HESADTQRAY
RKEAERLILW AIVERGRALS SLTTDDAIAY RGFLRRPTPR ERWVGPPRPR QSVEWRPFNG
SLSARSTAHA LTVLSAMFRW LVEQRYVQAN PFAGVKVRGG VLHTGLDVSR GFTEGEWLLI
RTLADGLEWS YGWSEPAAQR LRFLLDFGYA TGLRAGELVG AKLGDIRRDE HGDHWLHVIG
KGGRPGKVAL PTLARTALDF WLMQRGLPVT PSRWIPSTPL VSSLEEDAAG IQSTRLWRVI
RRFFLLVAGA IEGEQPATAE KLRRASPHWI RHTHATHALA RGAELIMVRD NLRHASISTT
STYLHSDEAQ RARQFDRAFC SRSSK
|
|---|
| |