Gene Bcen2424_5549 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagBcen2424_5549 
Symbol 
ID4453394 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameBurkholderia cenocepacia HI2424 
KingdomBacteria 
Replicon accessionNC_008543 
Strand
Start bp2657445 
End bp2658452 
Gene Length1008 bp 
Protein Length335 aa 
Translation table11 
GC content70% 
IMG OID639697610 
ProductNAD-dependent epimerase/dehydratase 
Protein accessionYP_839175 
Protein GI116693642 
COG category[G] Carbohydrate transport and metabolism
[M] Cell wall/membrane/envelope biogenesis 
COG ID[COG0451] Nucleoside-diphosphate-sugar epimerases 
TIGRFAM ID[TIGR03466] hopanoid-associated sugar epimerase 


Plasmid Coverage information

Num covering plasmid clones24 
Plasmid unclonability p-value0.482021 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones14 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGACTGATA CCTCCCGCGA TCTCGTTCTC GTCACCGGCG CATCCGGTTT CGTCGGCTCG 
GCCGTCGCGC GCATCGCGCA GCAGAAAGGC TATGCGGTGC GCGTGCTCGT GCGCCCCACC
AGCCCGCGCA CGAACGTCGC GGATCTCGAT GCCGAGATCG TCACCGGCGA CATGCGCGAC
GAGGCGTCGA TGCGCGCCGC GCTGCGCGGC GTGCGCTACC TGCTGCACGT CGCGGCCGAC
TACCGGCTGT GGGCACCCGA CCCCGACGAG ATCGAGCGCG CGAACCTCGA AGGCGCGGTC
GCGACGATGC GCGCGGCCCG CGCCGAAGGC GTCGAGCGGA TCGTCTACAC GAGCAGCGTC
GCGACGCTGA AGGTGACGAG CGCCGGCGAT CCGTCCGACG AGAACCGGCC GCTCACGGCC
GAGCAGGCGA TCGGCGTCTA CAAGCGCAGC AAGGTGCTCG CGGAGCGCGC GGTCGAACGG
ATGATCGCCG ACGAAGGGCT GCCGGCCGTG ATCGTCAATC CGTCGACGCC GATCGGCCCG
CGCGACGTGA AGCCGACGCC GACCGGCCGC ATCATCGTCG AGGCCGCGCT CGGCAAGATT
CCTGCGTTCG TCGATACGGG GCTGAACCTC GTGCACGTCG ACGACGTCGC GCACGGCCAC
TTCCTCGCGC TCGAGCGCGG CCGGATCGGC GAGCGCTACA TCCTCGGCGG CGAGAACCTG
CCGCTGCAGC AGATGCTCGC GGACATCGCG CAGATGACCG GCCGCAAGGC GCCGACGATC
GCGCTGCCGC GCTGGCCGCT GTACCCGCTC GCGGTCGGCG CCGAAGCGGT CGCAAAGTTC
ACGAAGAAGG AGCCGTTCGT CACCGTCGAC GGGCTGCGGA TGTCGAAGAA CAAGATGTAT
TTCACGTCCG CGAAGGCCGA GCGCGAACTC GGCTACCGTG CGCGCCCGTA TCGCGAAGGG
CTGCGCGATG CACTGGACTG GTTCGGCTCG GCGGGCTACC TCAAGTAA
 
Protein sequence
MTDTSRDLVL VTGASGFVGS AVARIAQQKG YAVRVLVRPT SPRTNVADLD AEIVTGDMRD 
EASMRAALRG VRYLLHVAAD YRLWAPDPDE IERANLEGAV ATMRAARAEG VERIVYTSSV
ATLKVTSAGD PSDENRPLTA EQAIGVYKRS KVLAERAVER MIADEGLPAV IVNPSTPIGP
RDVKPTPTGR IIVEAALGKI PAFVDTGLNL VHVDDVAHGH FLALERGRIG ERYILGGENL
PLQQMLADIA QMTGRKAPTI ALPRWPLYPL AVGAEAVAKF TKKEPFVTVD GLRMSKNKMY
FTSAKAEREL GYRARPYREG LRDALDWFGS AGYLK