| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bcen2424_5351 |
|---|
| Symbol | |
|---|
| ID | 4453818 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Burkholderia cenocepacia HI2424 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008543 |
|---|
| Strand | - |
|---|
| Start bp | 2442057 |
|---|
| End bp | 2445242 |
|---|
| Gene Length | 3186 bp |
|---|
| Protein Length | 1061 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 66% |
|---|
| IMG OID | 639697412 |
|---|
| Product | hydrophobe/amphiphile efflux-1 (HAE1) family protein |
|---|
| Protein accession | YP_838977 |
|---|
| Protein GI | 116693444 |
|---|
| COG category | [V] Defense mechanisms |
|---|
| COG ID | [COG0841] Cation/multidrug efflux pump |
|---|
| TIGRFAM ID | [TIGR00915] The (Largely Gram-negative Bacterial) Hydrophobe/Amphiphile Efflux-1 (HAE1) Family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 11 |
|---|
| Plasmid unclonability p-value | 0.31153 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 8 |
|---|
| Fosmid unclonability p-value | 0.391167 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAACATTT CCAAATTCTT TATCGACCGG CCGATCTTTG CAGGAGTCCT ATCGGTGATC
ATCCTGCTCG GCGGGGTGAT CGCGATGTTC CTGCTGCCGA TTTCGGAATA TCCGGAAGTC
GTGCCGCCTT CCGTGATCGT GAAGGCGCAG TACCCGGGCG CGAACCCGAA AGTGATCGCC
GAGACGGTCG CGTCGCCGCT TGAAGAGCAG ATCAACGGCG TTGAGGACAT GCTCTACATG
CAGTCGCAGG CGAACAGCGA CGGCAACATG ACGATCACCG TCACGTTCAA GCTCGGCACC
GATCCGGACA AGGCCACGCA GCTCGTGCAG AACCGCGTGA ACCAGGCGCT GCCTCGCTTG
CCGGAAGACG TGCAGCGGCT CGGCATCACC ACGGTGAAGA GCTCGCCGAC GCTGACGATG
GTGGTCCACC TGATCTCGCC GGACAACCGC TACGACATGA CCTACCTGCG CAACTACGCG
CTGATCAACG TGAAGGATCG CCTGTCGCGA ATCCAGGGCG TCGGTCAGGT GCAGCTGTGG
GGTTCGGGCG ACTACGCGAT GCGCGTGTGG CTCGATCCGC AGAAGGTCGC GCAGCGCGGG
CTGTCGGCCG AGGACGTCGT GCAGTCGATC CGCGAGCAGA ACGTACAGGT CGCGGCCGGC
GTGATCGGCG CATCGCCGTC GCTGCCCGGC ACGCCGCTGC AGCTGTCGGT GAACGCGCGC
GGCCGCCTGC AGACGGAAGA CGAATTCGGC GACATCGTCG TGAAGACGAC GCCGGACGGC
GGCGTCACGC ACCTGCGCGA CATCGCGCGG ATCGAGCTCG ACGCATCCGA ATACGGGTTG
CGCTCGCTGC TCGACAACAA GCCGGCCGTC GCGATGGCGA TCAACCAGTC GCCCGGCGCG
AACTCGCTGC AGATCTCGGA CGAAGTGCGC AAGACGATGG CCGAGCTGAA GCAGGACATG
CCGGCGGGCG TCGACTACAA GATCGTCTAT GACCCGACGC AGTTCGTGCG CTCGTCGATC
AAGGCCGTCG TGCACACGCT GCTCGAAGCG ATCGCGCTGG TCGTGATCGT CGTGATCGTG
TTCCTGCAGA CCTGGCGCGC GTCGCTGATT CCGCTGATCG CGGTGCCGGT GTCGATCATC
GGCACGTTCT CGCTGCTGCT GGCGTTCGGG TATTCGATCA ACGCGTTGTC GCTGTTCGGG
ATGGTGCTCG CGATCGGGAT CGTGGTCGAC GATGCGATCG TCGTCGTCGA GAACGTCGAG
CGCAACATCG AGGGCGGGAT GAACGCGCGG CAGGCGACCT ACAAGGCGAT GCAGGAAGTG
AGCGGGCCGA TCATCGCGAT CGCGCTGACG CTCGTCGCCG TGTTCGTGCC GCTCGCGTTC
ATGTCGGGCC TGACCGGCCA GTTCTACAAG CAGTTCGCGA TGACCATCGC GATCTCGACG
GTGATCTCGG CGTTCAACTC GCTGACGCTG TCGCCGGCGC TGTCGGCGAT CCTGCTGAAG
GGTCACGGCG ACAAGGAGGA CTGGCTCACG CGCGTGATGA ACCGCGTGCT CGGCGGCTTC
TTCCGCGGCT TCAACAAGGT GTTCCATCGC GGCGCGGAGA ACTACGGCCG CGGCGTGCGC
GGCGTGCTGT CGCGCAAGAC GCTGATGCTG GGCGTGTACC TCGTGCTGGT GGGCGCGACC
GTGCTCGTGT CGAAGGTCGT GCCGGGCGGC TTCGTGCCCG CGCAGGACAA GGAATACCTG
ATCGCGTTCG CGCAGCTGCC GAACGGCGCC TCGCTCGACC GCACCGAGAA GGTGATCCGC
GACATGGGTT CGATCGCGCT GAAGCAGCCG GGCGTCGAGA GCGCGGTCGC GTTCCCGGGG
CTGTCGGTGA ACGGCTTCAC CAACAGCTCG AGCGCGGGCA TCGTGTTCGT CACGCTCAAG
CCGTTCTCGG AACGGCACGG CAAGGCGCTG TCGGCCGGCG CGATCGCGGG TGCGCTGAAC
CAGAAGTACA GCGCGATGAA GGATTCGTTC GTCGCGGTGT TCCCGCCGCC GCCGGTGCTC
GGCCTCGGTA CGCTCGGCGG GTTCAAGATG CAGATCGAGG ATCGCGGCGC GGTCGGCTAC
GCGAAGCTGT CGGATGCGAC CAACGACTTC ATCAAGCGCG CGCAGCAGGC GCCTGAACTC
GGCCCGCTGT TCACGAGCTA CCAGATCAAC GTGCCGCAGC TCAACGTCGA TCTCGACCGC
GTGAAGGCGA AGCAGCTCGG CGTGCCGGTG ACCGACGTGT TCAACACGAT GCAGGTGTAT
CTCGGTTCGC TGTACGTGAA CGATTTCAAC CGCTTCGGGC GCGTGTACCA GGTGCGCGTG
CAGGCCGATG CGCCGTTCCG TCAGCGCGCG GACGACATCC TGCAGTTGAA GACCCGCAAC
GACAAGGGCG AGATGGTGCC GCTGTCGTCG CTGGTGACGG TGACGCCGAC GTTCGGCCCG
GAAATGGTCG TGCGCTACAA CGGCTACACG GCGGCCGACA TCAACGGCGG CCCGGCGCCC
GGCTTCTCGT CGGGGCAGGC GCAGGCCGCG GTCGAGCGCA TCGCGCACGA GACGCTGCCG
CGCGGCGTGC GGTTCGAATG GACCGACCTC ACGTACCAGC AGATCCTCGC GGGCGATTCG
GCGATGTATG TGTTCCCGAT CAGCGTGCTG CTCGTGTTCC TCGTGCTCGC CGCGCTGTAT
GAAAGCCTGA CGCTGCCGCT CGCGGTGATC CTGATCGTGC CGATGAGCAT TCTGTCGGCG
CTGACGGGCG TGTGGCTCAC ACAGGGCGAC AACAACATCT TCACGCAGAT CGGCCTGATG
GTGCTGGTGG GGCTGTCGGC GAAGAACGCG ATCCTGATCG TCGAATTCGC GCGCGAGCTC
GAACACGACG GCAGGACGCC GCTCGAGGCC GCGATCGAGG CGAGCCGGCT GCGGCTGCGC
CCGATCCTGA TGACGTCGAT CGCCTTCATC ATGGGCGTGG TGCCGCTCGT CACGTCGACC
GGCGCCGGAT CGGAAATGCG CCATGCGATG GGTGTCGCGG TGTTCTTCGG GATGCTCGGC
GTGACGCTGT TCGGGCTGAT GCTGACGCCG GTGTTCTACG TCGTGCTGCG TACGCTCGCG
GGCGGCAAGA TCCACGTCGC CGGCAAGGAT TCGACGGGGT ACGGCGTGCC GGCGCCCGAT
GCTTGA
|
|---|
| Protein sequence | MNISKFFIDR PIFAGVLSVI ILLGGVIAMF LLPISEYPEV VPPSVIVKAQ YPGANPKVIA
ETVASPLEEQ INGVEDMLYM QSQANSDGNM TITVTFKLGT DPDKATQLVQ NRVNQALPRL
PEDVQRLGIT TVKSSPTLTM VVHLISPDNR YDMTYLRNYA LINVKDRLSR IQGVGQVQLW
GSGDYAMRVW LDPQKVAQRG LSAEDVVQSI REQNVQVAAG VIGASPSLPG TPLQLSVNAR
GRLQTEDEFG DIVVKTTPDG GVTHLRDIAR IELDASEYGL RSLLDNKPAV AMAINQSPGA
NSLQISDEVR KTMAELKQDM PAGVDYKIVY DPTQFVRSSI KAVVHTLLEA IALVVIVVIV
FLQTWRASLI PLIAVPVSII GTFSLLLAFG YSINALSLFG MVLAIGIVVD DAIVVVENVE
RNIEGGMNAR QATYKAMQEV SGPIIAIALT LVAVFVPLAF MSGLTGQFYK QFAMTIAIST
VISAFNSLTL SPALSAILLK GHGDKEDWLT RVMNRVLGGF FRGFNKVFHR GAENYGRGVR
GVLSRKTLML GVYLVLVGAT VLVSKVVPGG FVPAQDKEYL IAFAQLPNGA SLDRTEKVIR
DMGSIALKQP GVESAVAFPG LSVNGFTNSS SAGIVFVTLK PFSERHGKAL SAGAIAGALN
QKYSAMKDSF VAVFPPPPVL GLGTLGGFKM QIEDRGAVGY AKLSDATNDF IKRAQQAPEL
GPLFTSYQIN VPQLNVDLDR VKAKQLGVPV TDVFNTMQVY LGSLYVNDFN RFGRVYQVRV
QADAPFRQRA DDILQLKTRN DKGEMVPLSS LVTVTPTFGP EMVVRYNGYT AADINGGPAP
GFSSGQAQAA VERIAHETLP RGVRFEWTDL TYQQILAGDS AMYVFPISVL LVFLVLAALY
ESLTLPLAVI LIVPMSILSA LTGVWLTQGD NNIFTQIGLM VLVGLSAKNA ILIVEFAREL
EHDGRTPLEA AIEASRLRLR PILMTSIAFI MGVVPLVTST GAGSEMRHAM GVAVFFGMLG
VTLFGLMLTP VFYVVLRTLA GGKIHVAGKD STGYGVPAPD A
|
|---|
| |