| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bcen2424_5315 |
|---|
| Symbol | |
|---|
| ID | 4453325 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Burkholderia cenocepacia HI2424 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008543 |
|---|
| Strand | - |
|---|
| Start bp | 2403958 |
|---|
| End bp | 2405757 |
|---|
| Gene Length | 1800 bp |
|---|
| Protein Length | 599 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 65% |
|---|
| IMG OID | 639697376 |
|---|
| Product | extracellular ligand-binding receptor |
|---|
| Protein accession | YP_838941 |
|---|
| Protein GI | 116693408 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0683] ABC-type branched-chain amino acid transport systems, periplasmic component |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 29 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 9 |
|---|
| Fosmid unclonability p-value | 0.568135 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCGGGCGC CTTCGGGCGC CCGTTTTCGT TGCGGAGCGC GTGCCGGCAA CAGGCAACCG
TCACTCGATG CCGATCGGCA GCGACAGCCC CACCTTCACG CGCGACATCA CGACCATCGT
TTCGAAGTGG CGGATGTTGT GGTGCTGGCG GAATACGCGC GTGGAAAATT CCTCGTAGTG
GTCGATGTCG CGCATCGCGA TCATCAGCAC GAAATCGGCG CGGCCCGTCA CCACGTAGCA
CTGCATGACT TCCGGCAGCG ATTTCAGGAA CCGCTTGAAT TCGTCGAGCA GGTCGACCCG
TTCGCGCTCG ACCTGCACGA GCACGAGCAT CGTCAACGGG AGGCCGACCT TGTTCGGATC
GACGACGGCG ACATCCTGCT GGATATAGCG CTCGTCGCGC AGCCGCTTGA CGCGGCGCAG
GCACGCGGGC GGGCTCAGGC CGATCTCGGC GGCGAGTGCC TGGTTGGTGA TCTGGTTGTC
GTGCTGGAGA CGCGCGAGGA TCCGCAGATC GAAGTCGTCG AGCGGTGCGG CGATGGAATT
CATCGGATTT CCTTGTGGAG GAAAAAACGA AACAAATCCA CGAATCGGGC GGCGCGATGT
TTATCGGATT TCGCGACGGC TGCCGATAAT CGTAGCATCC GTCAACCACG AAGCTGCGAG
GAAATCATCA TGCGTTCCCG ACATCTGCTG CTGGCGCTTG CGCCGCTCGT GCTGGCCGTT
TCCGCGTTCG GCGCGGACAC GGTCGTCGTA GGTTTCGCCG GCGCGCTCAC CGGCGCGCAG
GCGCATTTCG GCGAGGACAG CGCGCGCGGC ATCCGGCTCG CGATCGACGA AATCAATGCC
GGCCATCCGA GCGTCGCCGG GCATCCGGTC ACGTTCGCGC TCGACGCACA GGATGACCAG
GCCGACCCGA AGGTCGCGAC GACGGTCGCT CAGCGCTTCG TCGATACGCA TGTCAGCGCC
GTCATCGGTC ACCAGAATTC GGGAACGTCG ATCGCCGTCG CGCGGCTCTA CGCGACGGCC
AACATCGCGG AGCTGACACC GTCGGCGACC AATCCCGAGT TCACGCGCCT GGGCTATCGC
ACCACGTTCC GGTTGCTCGC GAATGACGAC TTCCTCGGTC AGGCCGTCGC CCGCTATGCG
GTCGAGCAGC TGCACGCGCG CCGTATCGGC GTCGTCGACG ATCGCACGGC GTACGGGCAG
GGCATCGCGG ACGTGTTCGT CGGCGGGCTC GGGGCGTCGG GCGCGACCGT CGTCGCACGC
GAATACACGA CGGACAAGGC CTTCGACTTC GGCGCACCGC TGACGTTGCT CAAGGGCAAG
GCGCCCGATG CGATCTTCTT CGGCGGCATG GACACGCAGG GCGGCCCGAT GCTCAAGCAG
ATGAGGAAGT TGCGGATTGC CGCGCCGCTG CTGGGCGGTG ACGGCCTGTG CACGCACGAA
ATCCTGAAGC TGGCCGGCGA CGCGCTCGAC GGCAATCTCG TGTGCGCGGA CGGCGGCAGG
AGCCTGGCGA AGATGCCGGG CGGTCCGGCG TTCGCTGCAC GCTTCACGCA GAAATACGGC
GCGCCCGTGC AGCTCTACGC GCCGTATGCG TACGACGCGA TGATGGCCGT CTACCACGCG
GTGATGCTCG CGCAGTCCAC CGATCCCGCG AAGATTGTCG ATGCGCTGCA TCGCGTCGAC
TTCCAGGGCG TGACCGGCCG GATCGCATTC GACGCACGCG GCGAACTGCG CAATCCGGCG
GCAACGATTT CGACGTTCAA AGGAGGCAAC AAGGTGACTT TGTCGGAGGT GGTCAAATGA
|
|---|
| Protein sequence | MRAPSGARFR CGARAGNRQP SLDADRQRQP HLHARHHDHR FEVADVVVLA EYARGKFLVV
VDVAHRDHQH EIGAARHHVA LHDFRQRFQE PLEFVEQVDP FALDLHEHEH RQREADLVRI
DDGDILLDIA LVAQPLDAAQ ARGRAQADLG GECLVGDLVV VLETREDPQI EVVERCGDGI
HRISLWRKKR NKSTNRAARC LSDFATAADN RSIRQPRSCE EIIMRSRHLL LALAPLVLAV
SAFGADTVVV GFAGALTGAQ AHFGEDSARG IRLAIDEINA GHPSVAGHPV TFALDAQDDQ
ADPKVATTVA QRFVDTHVSA VIGHQNSGTS IAVARLYATA NIAELTPSAT NPEFTRLGYR
TTFRLLANDD FLGQAVARYA VEQLHARRIG VVDDRTAYGQ GIADVFVGGL GASGATVVAR
EYTTDKAFDF GAPLTLLKGK APDAIFFGGM DTQGGPMLKQ MRKLRIAAPL LGGDGLCTHE
ILKLAGDALD GNLVCADGGR SLAKMPGGPA FAARFTQKYG APVQLYAPYA YDAMMAVYHA
VMLAQSTDPA KIVDALHRVD FQGVTGRIAF DARGELRNPA ATISTFKGGN KVTLSEVVK
|
|---|
| |