| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bcen2424_5172 |
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| Symbol | |
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| ID | 4452941 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Burkholderia cenocepacia HI2424 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008543 |
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| Strand | - |
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| Start bp | 2218922 |
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| End bp | 2220091 |
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| Gene Length | 1170 bp |
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| Protein Length | 389 aa |
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| Translation table | 11 |
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| GC content | 67% |
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| IMG OID | 639697228 |
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| Product | glycine betaine/L-proline ABC transporter, ATPase subunit |
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| Protein accession | YP_838798 |
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| Protein GI | 116693265 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG4175] ABC-type proline/glycine betaine transport system, ATPase component |
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| TIGRFAM ID | [TIGR01186] glycine betaine/L-proline transport ATP binding subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | 14 |
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| Plasmid unclonability p-value | 0.00993584 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
| Num covering fosmid clones | 8 |
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| Fosmid unclonability p-value | 0.408818 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGATGCCC CCAAGGTTGT GGTCGAAGGT CTGTGCAAGG TGTTTGGAAG CAATCCGCAG
CAGGCGCTCG ACATGCTCGC CGCCGGCGCG ACGAAGGACG ATGTGCTCAA GCGCACCGGC
CAGGTCGTCG GCGTGCACAA CGTCTCCTTC GATGTGCAGG AAGGCGAAAT TTTCGTGCTG
ATGGGCCTGT CCGGCTCCGG CAAGTCCACG CTGATCCGCC TTGTGAACCG GCTGGTCGAT
CCGAGCGCCG GCAAGGTGCT GATCGACGGG CTCGACGTCG CGTCGGCGCG CCGCTCGGCG
CTGACCGCGC TGCGCCGCAA GGACATGAGC ATGGTGTTCC AGTCGTTCGC GCTGATGCCG
CATCGCACCG TCGTGTCGAA TGCCGCGTTC GGGCTCGAAG TCGGCGGCAT GGGCAAGAAG
GAGCGCGAGC GCCGTGCGAT GGAAGTGCTC GAGCAAGTCG GCCTCGCGCC GTTCTCGCAC
AAGCTGCCGT CCGAGCTGTC GGGCGGCATG CAGCAGCGCG TCGGCCTCGC TCGCGCGCTG
GCCGTGAATC CGTCGCTGAT GATCATGGAC GAGGCGTTCT CCGCGCTCGA TCCGCTCAAG
CGCCGCGAAA TGCAGGACGT GCTGCTGCAA CTGCAGAAGG AGCAGCGCCG CACGATCATG
TTCGTGTCGC ATGATCTCGA GGAAGCGCTG CGCATCGGCA ACCGCATCGC GATCATGGAG
GGCGGCCGCC TCGTGCAGGT CGGCACGCCG CAGGACATCA TCGCGAACCC GGCCGACGAT
TACGTGCGCG CGTTCTTCGA CGGCATCGAC ACCAGCCGCT ACCTCACCGC CGGCGACCTG
ATGCAGACGG GCGCCGTGCC GCTCGTGTCG AAGTGCGATG CCGCGAACGT CGCGGCTTCG
CTGAACGGCA GCGCCGAATA CGCGTTCGTG CTCGACGCCG CACGCAAGAT TCGCGGCTTC
GTCACGCGCG AGGCGCTCGG CCAGGACACG CCGTCCGTGC GGCCGATCGA AAGCATCCGG
CGCGATGCGT CGCTCGAACA TGTCGTCGCG CGCGTGGTCG CGAGCCCGAA TGCACTGCCC
GTCGTCGACG ACGACGGCTG CTACTGCGGC TCGGTCGATC GTGCGCTCAT CCTGAAGGCC
ATCACGCGTT CGCGAGGCTC CCATGTCTGA
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| Protein sequence | MDAPKVVVEG LCKVFGSNPQ QALDMLAAGA TKDDVLKRTG QVVGVHNVSF DVQEGEIFVL
MGLSGSGKST LIRLVNRLVD PSAGKVLIDG LDVASARRSA LTALRRKDMS MVFQSFALMP
HRTVVSNAAF GLEVGGMGKK ERERRAMEVL EQVGLAPFSH KLPSELSGGM QQRVGLARAL
AVNPSLMIMD EAFSALDPLK RREMQDVLLQ LQKEQRRTIM FVSHDLEEAL RIGNRIAIME
GGRLVQVGTP QDIIANPADD YVRAFFDGID TSRYLTAGDL MQTGAVPLVS KCDAANVAAS
LNGSAEYAFV LDAARKIRGF VTREALGQDT PSVRPIESIR RDASLEHVVA RVVASPNALP
VVDDDGCYCG SVDRALILKA ITRSRGSHV
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