| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bcen2424_5092 |
|---|
| Symbol | |
|---|
| ID | 4453668 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Burkholderia cenocepacia HI2424 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008543 |
|---|
| Strand | - |
|---|
| Start bp | 2122545 |
|---|
| End bp | 2124395 |
|---|
| Gene Length | 1851 bp |
|---|
| Protein Length | 616 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 71% |
|---|
| IMG OID | 639697148 |
|---|
| Product | RND efflux system outer membrane lipoprotein |
|---|
| Protein accession | YP_838718 |
|---|
| Protein GI | 116693185 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis
[U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG1538] Outer membrane protein |
|---|
| TIGRFAM ID | [TIGR01845] efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 14 |
|---|
| Plasmid unclonability p-value | 0.0523348 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 11 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGATTCAAG CGGCGGGTTC GGCGCGTGGC GTGAAGGGCG GCTCGATGAT CGCGGCCGCC
GCGGCATTGC TCGCGTTGGC CGGATGCGTG CCGTCGGGCT TCCTGCCGTC GCTGTCGCTG
CGTGCGCCGG CCGACGATGC GCTCGCGCAT ACCGCCGGCC CCGGCGCGAA CGGCGCATGG
CCGGCGCCCG ACTGGGTGAA GCAGTTGCAG GACCCGCAGC TCGACGACCT GGTCGCCGAG
GCGTCGCAGC ACAACCCGGA TCTACAGGTC GCGCAGGCGC GGTTGCGGAT CGCGCAGGCG
CAGCTTCAGC AGTTCGATTC GCTGACCGGT TTGACCGGCA CGGCCGGCGC GACGATCAGC
CGGGCACGGA TGCCGAAACC CGGCGACATT GCCGACGTGA CGGCCGGCGG CTATCGCGTG
CCGGTGCAGA TCTTCGGCGA TCCGAACGTA TCGCCGTCGT CGGTCTTCGT CGGGCTGAAC
TACCAGCTCG ACCTGTGGGG CAAGAACCGC GCGGCGACGA AGAGCCTGAT GTCGCTGCGC
GACGCGGCCG GCGTCGAAGC CGAACAGGTG CGGCTCACGC TCGCCGTCGC GATCGTCACC
GTGTATTGCC AGCTCGACCA GGCGTACGCG GTGCGCGACC TGTTGCAGCA GAAGCTGAAG
ATCAGCCAGC GCGTGACGGC CGTGCTGCGC GAGCGCACCG CGCGCGGCCT CGACAACGCG
TACGACGCGA GCGATGCGTC GATCAAGCGC AGCCGTCTGC TCGAGCAGAT CGCGCTGAAC
GACGAGCAGA TCAAGCTCGC GCAACTGCAA CTCGGCGTGC TGTCGGGCCG CGGCCCGGAG
CGCGGGCTCG CGCTGCAGCG GCCGCGCGTC GGCGCGTTCG CGGGCGGCGC CGTGCCCGCC
CGGCTGCCGG CCGATCTGCT CGGCCGCCGG CCCGACATCG TCGCCGCGCG GTTGCGCGTC
GAAGCCGCGT TCGCGAATGC CGACTCGACG CGTGCGCAGT TCTATCCGGA CGTGAATCTC
GTCGCGCTCG GCGGCGTGTT CGCACTGACG CCCGCGTCGC TGTTCTCGCG CGATTCGCTC
GCGGGCTCCG TGGGCCCCGC GATCTCGCTG CCGATCTTCG ATCGCGGCCG CTTGAAGGCG
AAGCTCGGCG CGGACGTCGC GCAGGCCGAC GTCGCGATCG GGCTGTACAA CAAGACCGTC
GACGACGCGC TCGGGCAGGT CGCGCAACTC GTCACGTCGC TGCAGACGTC GCAGACGCTC
GTCGCGCAGC AGCAGGACGC GGTCGCGGCC GCGCAGAAGA TCGTGCAGAT CGCGGCGGAT
CGGCATCGGC GCGGCGTGCT GATGCAGAAG GACGTCGATG TCGCGGATCT CACGCTGATC
GACGAGCGCG CGCAGATGAT CGCGCTGCTC GGCAAGCAGC GGACGCTGCG GGTGGGGCTG
ATCGGCGCGC TGGGCGGCGG GTTCGATGCG GGCGCAACGG TCGCGCAAGC GCAGACGCCG
GCCGGGCCGC GGGCGCGGAG TGGGGCGGCG AAGCGCGGGG CGGCAACGGC CGTGGCTGCT
GTGGGCGCCG TGGCCGCGAA TCGGGAGACG GCTGGCCAGT CTAACGATGC ACGCGCAGGC
AGCACGGCAG TGTCGCCGGC TGCTACCGCG ACGAGCAACG CGTCTGCATC GGCACGACGC
GACGACACGA CACGCCCGTC GACGATCGGT GCGACCCGCC CCGACGCGGC GCCGCGCGGC
AACCCCGTTC TCGCGCGCAC GGCCTCGGCG AGCCCGACGC GCGATTCGTC GCCGATGCCT
GCGATTCCCG TCTTCCAGCA CGATCGTCTG ATCGTTACGC AAAGCGACTG A
|
|---|
| Protein sequence | MIQAAGSARG VKGGSMIAAA AALLALAGCV PSGFLPSLSL RAPADDALAH TAGPGANGAW
PAPDWVKQLQ DPQLDDLVAE ASQHNPDLQV AQARLRIAQA QLQQFDSLTG LTGTAGATIS
RARMPKPGDI ADVTAGGYRV PVQIFGDPNV SPSSVFVGLN YQLDLWGKNR AATKSLMSLR
DAAGVEAEQV RLTLAVAIVT VYCQLDQAYA VRDLLQQKLK ISQRVTAVLR ERTARGLDNA
YDASDASIKR SRLLEQIALN DEQIKLAQLQ LGVLSGRGPE RGLALQRPRV GAFAGGAVPA
RLPADLLGRR PDIVAARLRV EAAFANADST RAQFYPDVNL VALGGVFALT PASLFSRDSL
AGSVGPAISL PIFDRGRLKA KLGADVAQAD VAIGLYNKTV DDALGQVAQL VTSLQTSQTL
VAQQQDAVAA AQKIVQIAAD RHRRGVLMQK DVDVADLTLI DERAQMIALL GKQRTLRVGL
IGALGGGFDA GATVAQAQTP AGPRARSGAA KRGAATAVAA VGAVAANRET AGQSNDARAG
STAVSPAATA TSNASASARR DDTTRPSTIG ATRPDAAPRG NPVLARTASA SPTRDSSPMP
AIPVFQHDRL IVTQSD
|
|---|
| |