| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bcen2424_4893 |
|---|
| Symbol | |
|---|
| ID | 4451365 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Burkholderia cenocepacia HI2424 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008543 |
|---|
| Strand | + |
|---|
| Start bp | 1893496 |
|---|
| End bp | 1895010 |
|---|
| Gene Length | 1515 bp |
|---|
| Protein Length | 504 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 66% |
|---|
| IMG OID | 639696949 |
|---|
| Product | spermidine synthase |
|---|
| Protein accession | YP_838520 |
|---|
| Protein GI | 116692987 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG4262] Predicted spermidine synthase with an N-terminal membrane domain |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 23 |
|---|
| Plasmid unclonability p-value | 0.737239 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 10 |
|---|
| Fosmid unclonability p-value | 0.923655 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCTGCATA AGCGTGCGCT CGTCCTGTCG ATTCTCGTGC TCGCGTCGTG CGGGCTCGGC
TACGAACTGA TCAGCAGCGC ACTGTCGAGC TATCTGCTCG GCGACTCGAT CCTGCAGTTC
TCGTCGGTGA TCGGCTGCTA CCTGTTCGCG ATGGGGATCG GCTCGTGGCT CGCGAAGTTC
GTCGAAGACG ACGACGTGCT CGACCGCTTC GTCGACATCG AGCTGCTCGT CGGCCTGCTC
GGCGGCGTGT CGGCAGCGCT GCTGTTCGTG GTGTTCGCAT GGCTCGCCGC GCCGTTTCGC
GCGGCGCTTT ACGCACTGGT GCTCGCGCTC GGCCTGCTGA TCGGGATGGA GATTCCGCTC
GTGATGCGCG CGTTCCAGCA GCGGCGCCAG GCGTTCCGCC ATACCGTCAG CGAGGTGCTG
ACCTTCGACT ATCTCGGCTC GCTCGCCGTG TCGCTGATCT TCCCGCTGGT GCTCGCGCCG
CGCCTCGGCC TGCTGCGTAC GAGCTTCCTG TTCGGTCTCC TGAACGCATT CGTCGCATTG
TGGACGACCC ACCTGTTCCG CGACGAGATC CGCAACGTGC GCGGCAAGCT GATGCGTGCG
TCGCTCGTGA TCGGGCTGCT GGTCGCCGGG TTCGCGCTGT CGGATCGCAT CACGCACTGG
GCCGAACACG GCGTGTACGG CGACGAGACG ATCTACTCGG AAACGACGCC GTACCAGCGC
ATCGTGCTCA CGCAGTGGCA CGACGACATG CGACTGTACC TGAACGGCAA CCTGCAATTC
TCGTCGCGCG ACGAGCACCG CTATCACGAG GCGCTGATCC ATCCGGCGAT CGAGGCACTG
CCGTGGGCGA AGCGCGTGCT CGTGCTGGGC GGCGGCGACG GCCTCGCGGT GCGCGAACTG
CTCAAGCACC GCAACCTCGA GCAGATCACG CTCGTCGATC TCGATCCGGC GATGACGAAG
CTGTTCTCGA CGTCGGCACC GCTCGTCAAG CTGAACCAGG GTGCGCTGAA GGACCCGCGC
GTGCACGTGA TCAACGACGA CGCGGTGCGC TGGCTCGAAT CGAATGCCGA CGTGTACGAC
GCGATCGTCG TCGATTTCCC CGATCCGACC AATTTCGGGC TCGGCCGCCT GTATTCGGTG
CCGGTGTTCC GGCTGCTGGC GCGCCACCTG TCGGAGAACG GTTACACGGT GATCCAGTCG
ACGTCGCCGT ATTTCGCGCC GCACGCGTAC TGGACCATCA TCGCGACGCT GCACGAAGCC
GGGCTCAACA CGTGGCCGTA CCACTGCTAC GTGCCGTCGT TCGGCGACTG GGGCTTCGTG
ATCGCCGGCA AGCGCCGCGA CTTCACGGTG CCGACGCATT ACTCGGTGCC GACGCGCTGG
CTCGATGCGC AAACGGCCGC CGAGATGTTC CACTTCCCGG CCGACATGCC GGCGCTGTCG
ATGTCGCCGA ACGAACTCAA CGACCAGCCG CTCGTGCGCC GCTTCGACGA CGACTGGAAG
CACGTGCTGC GCTGA
|
|---|
| Protein sequence | MLHKRALVLS ILVLASCGLG YELISSALSS YLLGDSILQF SSVIGCYLFA MGIGSWLAKF
VEDDDVLDRF VDIELLVGLL GGVSAALLFV VFAWLAAPFR AALYALVLAL GLLIGMEIPL
VMRAFQQRRQ AFRHTVSEVL TFDYLGSLAV SLIFPLVLAP RLGLLRTSFL FGLLNAFVAL
WTTHLFRDEI RNVRGKLMRA SLVIGLLVAG FALSDRITHW AEHGVYGDET IYSETTPYQR
IVLTQWHDDM RLYLNGNLQF SSRDEHRYHE ALIHPAIEAL PWAKRVLVLG GGDGLAVREL
LKHRNLEQIT LVDLDPAMTK LFSTSAPLVK LNQGALKDPR VHVINDDAVR WLESNADVYD
AIVVDFPDPT NFGLGRLYSV PVFRLLARHL SENGYTVIQS TSPYFAPHAY WTIIATLHEA
GLNTWPYHCY VPSFGDWGFV IAGKRRDFTV PTHYSVPTRW LDAQTAAEMF HFPADMPALS
MSPNELNDQP LVRRFDDDWK HVLR
|
|---|
| |