Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Bcen2424_4856 |
Symbol | |
ID | 4451729 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Burkholderia cenocepacia HI2424 |
Kingdom | Bacteria |
Replicon accession | NC_008543 |
Strand | - |
Start bp | 1856536 |
End bp | 1858755 |
Gene Length | 2220 bp |
Protein Length | 739 aa |
Translation table | 11 |
GC content | 70% |
IMG OID | 639696912 |
Product | type III secretion FHIPEP protein |
Protein accession | YP_838483 |
Protein GI | 116692950 |
COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
COG ID | [COG4789] Type III secretory pathway, component EscV |
TIGRFAM ID | [TIGR01399] type III secretion protein, HrcV family |
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Plasmid Coverage information |
Num covering plasmid clones | 19 |
Plasmid unclonability p-value | 0.852382 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 16 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGGCTGAAC CGAAGGCGCT CCCCCGCGAC TGGCAGCGGT TGTTTTCCGC CGGCCGCGGC GTGTCCGGAC GGCGCCTCGG GGGCGCGTCG CCGCGCGCCG ACCTGTTTCT CGCGGCCTTC ATCGTCGCGG TCGTCGCGCT GTTCATCCTG CCGCTGCCGC AGGCCGCGCT CGACGGGATG ATCTCGCTGA ATCTCGCGGC GAGCGTCGTG CTGCTGACGG TGTCGACCTA CGTGCCGTCG GCGGTCAGTT TCTCGTCGTT TCCCGCGCTG CTGCTGTTCA CGACGCTGTT CCGGCTCGCG CTGAACATCG CGTCGTGCAA GCTGATCCTG CTGCATGCGA ACGCCGGCCA CGTGATCGAC GCGTTCGGGC GGCTGGTGGT CGGCAACAAC GTGGTGGTGG GCGGCGTGGT GTTCCTCGTG ATCGCGGTCG TGCAGTTCAT CGTGATCGCG AAAGGGTCGG AGCGGGTGGC CGAAGTCGGC GCGCGTTTCT CGCTCGACGC GATGCCGGGC AAGCAGATGA GCATCGACGC GGACCTGCGC GCGGGCATCA TCAGCGCCGA CGAGGCGCGC GAGCGGCGCG AGAAGCTCGA GCAGGAATCG CAGATGCACG GCGCGATGGA CGGCGCGATG AAGTTCGTGA AGGGCGACGC GATCGCGGGC CTCGTGATCG CGTTCATCAA CATCGTCGCA GGGATCGCGG TCGGCACGCT GATGCACGGG ATGGACATCG GCGAGGCGCT GCAGCGTTAC GCGATCCTGA CGGTCGGCGA CGGGATGGCG TCGCAGATTC CGTCGCTGCT GGTATCGATC GCGGCCGGCA TCGTGACCAC GCGCGTCGCG ACGCGCGATG CACGACAGCG CCAGCTCGGC GAACAGCTCG GCGAGCAACT GGGCGCACAC CCGCGCGCGC TGCTGATCGC GGCGTTCGTG CTGAGCGGTT TTCTCGTCGT GCCCGGTTTT CCGAAATGGT CGTTCGCGCT GATCGCGCTT GGCCTCGGCG CCTTCGCGTT CTCGCAACTG AAGCGCAAGA CGTCCGCGCC GAGCTTCAAC CTGATTCATG TCGCGGGGCG CGTCGGCGCG GCCGACGACG GCCAGCCCGC GAAGGTATCG CACGCGGCGG GCGTCACGTC GCTGATCGCG GTGTCGCTGT CCGACGACCT GCGCACGGGC CTGAACCTCG CGCAACTGCA GGCGGCGCTG TCGAGCGCGA AGGCGCGCGT CGACGCGGAC ATCGGCACGG TGTTCCCGCG CATCACGCTG AACGACGACG AGGGCGCGCC GGCCGGTACG TACCGGATCT ATCTGCAGGA CGTGCTCGTC GCGCACGGCG CGCTGAAGCC GGGCTGGCTG CTGTGGGACG GCGTCGCGCC GCTGCCGGAG CGCGCGGAGC GCCAGCCGGC CGAGGCGTTC GGCCCGTTCG CGACCGCGCT GTGGATCAAG CCCGACGGCG CGGCGCCGGA CGGCAAGTGG CTGTCGAGCG AGAGCGCGCT GGCCGCGCAC GTCGAGCAGA TCGTGCGCCA GCATGCGGAC GAACTGCTCG GCATCCAGGA GACGCAGGCG CTCGTGCATC TGGTGCGCCG CGACCATCCG GAGCTGGTGG GCGAACTGAC GCGGCTCGTG CCGTTGCAGC GCGTGACCGA AGTGCTGCGC CGGCTGCTCG CCGAACAGGT GCCGATCCGC AACCTGCGCG TGATCTTCGA GAGCCTGATC ACGTGGGCGC CGAACGAGCC CGACGACGTG ATCGCGCTGG TCGAGCTCGT GCGCGTCGAC CTGCGCCGGA TGATCACCGA TCGACACGCT GGCACGGCGC GCCAGCTGCG GGTCGTGCTG TTCGAGCAGA ACCTGCAGGA GCGGATCGAG AGCGCGGTGA TGCGCACGAA GCAGGGTAAT TTCCTCGCGC TGTCGAGTGC GGTCAAGCAG GACATCGGCG AACAGGTGCG CGCGATCGTG CAGGCCGCGC AGGCGGCCGG CCCCGGCGGC CACGGCAACG CGCAGGGTGG CGCGCACGGT GGCGCGCGGC TCGCGGTGAT GGTCGCGCTC GGCGCGCGCC GCTACGTGAA GACGATCCTG CAGCCGGTGC TGCCCGAACT CGCGGTGCTG TCGTACCAGG AAGTCGAGGA GGACGTGCAG TTGCATACGG TCGGCTGGGT GAAGAACCCG CCGGACGACG GCACGGTCGG CGCGGGCGCC GACGTGCGCG CGCCGGGAGC CGTGCAATGA
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Protein sequence | MAEPKALPRD WQRLFSAGRG VSGRRLGGAS PRADLFLAAF IVAVVALFIL PLPQAALDGM ISLNLAASVV LLTVSTYVPS AVSFSSFPAL LLFTTLFRLA LNIASCKLIL LHANAGHVID AFGRLVVGNN VVVGGVVFLV IAVVQFIVIA KGSERVAEVG ARFSLDAMPG KQMSIDADLR AGIISADEAR ERREKLEQES QMHGAMDGAM KFVKGDAIAG LVIAFINIVA GIAVGTLMHG MDIGEALQRY AILTVGDGMA SQIPSLLVSI AAGIVTTRVA TRDARQRQLG EQLGEQLGAH PRALLIAAFV LSGFLVVPGF PKWSFALIAL GLGAFAFSQL KRKTSAPSFN LIHVAGRVGA ADDGQPAKVS HAAGVTSLIA VSLSDDLRTG LNLAQLQAAL SSAKARVDAD IGTVFPRITL NDDEGAPAGT YRIYLQDVLV AHGALKPGWL LWDGVAPLPE RAERQPAEAF GPFATALWIK PDGAAPDGKW LSSESALAAH VEQIVRQHAD ELLGIQETQA LVHLVRRDHP ELVGELTRLV PLQRVTEVLR RLLAEQVPIR NLRVIFESLI TWAPNEPDDV IALVELVRVD LRRMITDRHA GTARQLRVVL FEQNLQERIE SAVMRTKQGN FLALSSAVKQ DIGEQVRAIV QAAQAAGPGG HGNAQGGAHG GARLAVMVAL GARRYVKTIL QPVLPELAVL SYQEVEEDVQ LHTVGWVKNP PDDGTVGAGA DVRAPGAVQ
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