| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bcen2424_4793 |
|---|
| Symbol | |
|---|
| ID | 4453622 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Burkholderia cenocepacia HI2424 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008543 |
|---|
| Strand | + |
|---|
| Start bp | 1780062 |
|---|
| End bp | 1781606 |
|---|
| Gene Length | 1545 bp |
|---|
| Protein Length | 514 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 70% |
|---|
| IMG OID | 639696849 |
|---|
| Product | major facilitator transporter |
|---|
| Protein accession | YP_838420 |
|---|
| Protein GI | 116692887 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG2814] Arabinose efflux permease |
|---|
| TIGRFAM ID | [TIGR00711] drug resistance transporter, EmrB/QacA subfamily |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 35 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 15 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGACGATG CCCAGAATAA GGGGTCAACG GCCTGCTTGC GTCGATCGCC TATCGGGCCC
TCATTCTTTG GATCTGCTTT CACCATGACG AACAACACCC TCGCCCCCTG CGCACCAGCC
TGCGCGGCCG CCGCGGCGAC GCCGCGCAGC CATCATAGCT GGGCGCTCGT GGTCCTGCTG
GTCGGCGCCA TTCTGCCGCC GCTCGACTAC TTCATCGTGA ATCTCGCGCT CCCGGCCATT
CGCGACGGCA TCGGCGCGCA CCAGGCCGAG TTGCAGCTCG TCGTGTCGGC CTATGCATGC
GCGAACGCGG TCGTCCAGAT CACCGGCGGG CGGCTCGGCG ACCTGTACGG ACGCAAGCGC
ATGTTCATGA TCGGCATGGC CGGCTTCGTG CTCGCGTCGA CGCTGTGCGG GCTCGCCGAC
AACGGCACGG TACTCGTCGG CGGCCGCGTG CTGCAGGGCC TGTTCGCCGC GATCCTCGCG
CCGCAGGTGC TCGCGACGAT CCGCAGCGTG TTCAGCCCGC AGGAACAGGT GCGCGTGATG
GGCTTCTACG GGTTCGCGTT CGGCCTCGCG GCCGTGATCG GCCAGCTTGG CGGCGGCGCG
CTGATCAGCC TGCATCCGTT CGGGCTCGGC TGGCGCGCGA TCTTCCTCGT CAATCTGCCG
ATCGGCATCC TGGCGCTGAT CGGCAGCTGG CGCTTCATCC CGGAAAATCG CGCGCCGCGC
GGCCAGCGCA TCGACGTGCC GGGTACGGTG CTGATGTCGC TGTTCCTGCT GATGCTCGTG
TACCCGCTCA CGCATGGTCG GGAAGCCGGC TGGCCGCTGT GGATGATCGC GTGCGGCGTC
GGCGCGCTGC CGATGCTCGG CGCGCTGCTG GCGGTCGAAG CGCGCCGGCT CGCGCGCGGC
CACGATCCGC TGCTCGACGT GCGGCTGCTC CGCAACCCGG TCGTCGCGCT CGGGCTCCTG
CTCGCGTTCC TGTTCTACAC GCTGAGTGCG TTCTTCCTGA GCTACGGGAT CTATCTGCAG
GGCTGCCTGA ACTGGTCGCC GCTCGCGTCC GGGTTCGCGA TCCTGCCGCT CGGGCTCGGT
TTCCTCGCGA GCCCGCTGCT GACGACGCGC CTCGTCGCCC GCTTCGGCGG GTATCGCGTG
CTCACGCTCG GCTTCGCGAT GCTCGCGGCC GGCGTCGCGA TCGCCGCCGC GCTCGCCCGC
GACGGCGCGC CGGGGCCCGG CTTCTATGCG GGCATCGCGG CGATCGGCAT CGGGCAAGGG
CTCGTGCTGC CGTCGGTCGT GCGGATCGTA CTCGCGGAAG TCGATGCGGC CCGCGCGGGA
GTCGCGTCCG GGATGGTCAG CGCGATGCTG CAGATCGGCG CGGCGGTCGG CGCCGCGACG
ATCGGCGGCG TGTTCTTCGC GCGGCTCGGC GTGCATCCGG CCGCGCTCGA TTACGTGCAG
GGCTTCAGGG CGTCGATGTT CACGCTGACA ATCGTGCTGC TGGGCTGCGT CGCGCTGTCG
ATGGCGCTCG GGCCGCTGCA TCGGCGGCTG CATGCGGATG CGTGA
|
|---|
| Protein sequence | MDDAQNKGST ACLRRSPIGP SFFGSAFTMT NNTLAPCAPA CAAAAATPRS HHSWALVVLL
VGAILPPLDY FIVNLALPAI RDGIGAHQAE LQLVVSAYAC ANAVVQITGG RLGDLYGRKR
MFMIGMAGFV LASTLCGLAD NGTVLVGGRV LQGLFAAILA PQVLATIRSV FSPQEQVRVM
GFYGFAFGLA AVIGQLGGGA LISLHPFGLG WRAIFLVNLP IGILALIGSW RFIPENRAPR
GQRIDVPGTV LMSLFLLMLV YPLTHGREAG WPLWMIACGV GALPMLGALL AVEARRLARG
HDPLLDVRLL RNPVVALGLL LAFLFYTLSA FFLSYGIYLQ GCLNWSPLAS GFAILPLGLG
FLASPLLTTR LVARFGGYRV LTLGFAMLAA GVAIAAALAR DGAPGPGFYA GIAAIGIGQG
LVLPSVVRIV LAEVDAARAG VASGMVSAML QIGAAVGAAT IGGVFFARLG VHPAALDYVQ
GFRASMFTLT IVLLGCVALS MALGPLHRRL HADA
|
|---|
| |