| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bcen2424_4535 |
|---|
| Symbol | |
|---|
| ID | 4452146 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Burkholderia cenocepacia HI2424 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008543 |
|---|
| Strand | - |
|---|
| Start bp | 1493052 |
|---|
| End bp | 1494938 |
|---|
| Gene Length | 1887 bp |
|---|
| Protein Length | 628 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 69% |
|---|
| IMG OID | 639696591 |
|---|
| Product | TRAP dicarboxylate transporter, DctM subunit |
|---|
| Protein accession | YP_838162 |
|---|
| Protein GI | 116692629 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG1593] TRAP-type C4-dicarboxylate transport system, large permease component
[COG3090] TRAP-type C4-dicarboxylate transport system, small permease component |
|---|
| TIGRFAM ID | [TIGR00786] TRAP transporter, DctM subunit |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 27 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 8 |
|---|
| Fosmid unclonability p-value | 0.303303 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGACATGC ACTCCGTGTC GGGCGCCGCG CCGGCTCCCG CTGCCGGCCA GCCGGCGCAT
CGCGTCGCCC GCGTGCTGGA TGCGGCGCTG CGCCGGCTCG AGTATCTGTC GGCCGTGGTC
CTCGCCGTCG ACGTGCTGGT CGTGTTCGTG TCGGTCGTGT TCCGCTATTT CCTGCACGAC
CCGGTCGACT GGGCCGAGGA AGTGGCCAGC GCGCTGATGA TCGTGCTGGT GTTCTTCGGC
GCGGCGACGG TGCTGGGGCG CAGCCAGCAT GTCGGCATCG ACGTGTTTCG CGGCCGGCTG
CCGGCACGCT GGCAGGGCGC GCTGATCCAG GTCGGCCACT GGATCGTGGC GGCCGTCGCG
CTGAACCTGC TGGTGTCGTC GTGCCAGTTG CTCGCGGATT CGTACGACCA GCTGACGACG
GGCGGCCTGC CGGGCTGGAT CAACGGGTAT CCGATGATGT TCGGCGCGCT GTTTATGACC
GTATTCGCGC TCGCCAATGC GCTGAACGCG CCGCGCCGCC GGGTGATCGG CACGTTCGTG
TGCTGTGCGG CGCTCGCGGG CGCCGTGTAC GGCTGGAACG CGCTGTGGCC CGCGCAGGCG
GTCGCGCCGG GCACGCTGCT GGTCGCGGGC TTCGTCGGCG GGCTGGTGCT CGGCGTGCCG
ATCGGGTTCG TGCTGGCGTT TTCGGCGCTG CTGTATTTCC TCGCCGATCC GACGCTGCCG
CTGCTCGTCT ACTCGCAACA GGTGATGGCC GGGGCCGACC ACTTCGTGCT GCTCGCGGTG
CCGTTCTTCG TGCTGGCGGG GCTGCTGATG GAGACCAACG GGATGTCCGC GCGGCTCGTC
GAGCTGCTGC TGCGGATCTT CGGGCGCGTG CGGGGCGGGC TCGGCCTGAT CGTGATCTTC
GCGACGGCGT GCTTTTCCGG CGTATCGGGC TCGAAACTGG CCGATATCGC GGCGGTGGGC
GGCGTCGTGA TGCCGGCGGT GCGCCGCGCG CGGCAGGACC CGAACGAAAC CGCCGCGCTG
CTCGCGTGCA GCGCGGTGAT GGCCGAGACG ATTCCGCCGT GCGTGAACAT GATCATCATG
GGCTTCGTCG CGAACATCTC GATCGCCGGG CTGTTCGTCG CGGGGATCGT CCCGGCGGCC
GTGCTGGCCG CGTCGCTCGC GGTCGTGACG GTGATCACCG GGCGCAAGAT CGACGTGGCC
GAGGTGTTCG GCGAGCGTCG CGCATGGCTG CCGCTGGCGG GCGGCGCGCT CGTCGCGCTG
GTCATGGTCG CGATGATCGG CAAGGGCGTG ACGTCGGGGA TCGCGACGTC GACCGAAGTG
TCGGCGTTCG CGGTGGTCTA CGCGCTCGTC GTGGGCTGGA TCGCGTTTCG CGAACTGACG
TGGCGCTCGG TCGGCCGCGT GTTCGTGCGC GCCGCATCGA TGGCGAGCGG TATCCTGTTC
ATCGTCGCGG CGGCGTCGAG CGTGTCGTTC GCGCTGTCGA TCGAGCAGAT TCCGGCCCTC
GTCTCGGGCA CAATGACGGC GTTTGCCCAT CAATACGGCG CGACGATGTT CCTGCTGCTG
GCGGCGCTGC TGATGATCGT GTTCGGCGCC GTGCTCGAAG GCGCGCCCGC GCTGATCATC
TTCGGGCCGC TGCTCGCGCC GATCGCACTG CAGCTCGGTA TCAATCCGCT GCATTTCGGC
ACGGTTGTGG TGGTGGCGAT GGGGTTCGGG TTGTTCGCGC CGCCGGTCGG GCTCGGGCTG
TTCACGACGT GCGCGATCAC GGGCACCGAG GTCGGGCGCG TAGCTCGGCC GATGGTGAAA
TACCTGCTGG TGCTGTTCGC TGCCCTCGTG GCGCTGATCT TCGCACCGGC GTTTTCGTTG
TGGCTGCCGG CCCATTTCGG CCTGTAG
|
|---|
| Protein sequence | MDMHSVSGAA PAPAAGQPAH RVARVLDAAL RRLEYLSAVV LAVDVLVVFV SVVFRYFLHD
PVDWAEEVAS ALMIVLVFFG AATVLGRSQH VGIDVFRGRL PARWQGALIQ VGHWIVAAVA
LNLLVSSCQL LADSYDQLTT GGLPGWINGY PMMFGALFMT VFALANALNA PRRRVIGTFV
CCAALAGAVY GWNALWPAQA VAPGTLLVAG FVGGLVLGVP IGFVLAFSAL LYFLADPTLP
LLVYSQQVMA GADHFVLLAV PFFVLAGLLM ETNGMSARLV ELLLRIFGRV RGGLGLIVIF
ATACFSGVSG SKLADIAAVG GVVMPAVRRA RQDPNETAAL LACSAVMAET IPPCVNMIIM
GFVANISIAG LFVAGIVPAA VLAASLAVVT VITGRKIDVA EVFGERRAWL PLAGGALVAL
VMVAMIGKGV TSGIATSTEV SAFAVVYALV VGWIAFRELT WRSVGRVFVR AASMASGILF
IVAAASSVSF ALSIEQIPAL VSGTMTAFAH QYGATMFLLL AALLMIVFGA VLEGAPALII
FGPLLAPIAL QLGINPLHFG TVVVVAMGFG LFAPPVGLGL FTTCAITGTE VGRVARPMVK
YLLVLFAALV ALIFAPAFSL WLPAHFGL
|
|---|
| |