Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Bcen2424_4394 |
Symbol | |
ID | 4453159 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Burkholderia cenocepacia HI2424 |
Kingdom | Bacteria |
Replicon accession | NC_008543 |
Strand | - |
Start bp | 1337619 |
End bp | 1338926 |
Gene Length | 1308 bp |
Protein Length | 435 aa |
Translation table | 11 |
GC content | 68% |
IMG OID | 639696450 |
Product | shikimate transporter |
Protein accession | YP_838021 |
Protein GI | 116692488 |
COG category | [G] Carbohydrate transport and metabolism |
COG ID | [COG2814] Arabinose efflux permease |
TIGRFAM ID | [TIGR00883] metabolite-proton symporter |
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Plasmid Coverage information |
Num covering plasmid clones | 22 |
Plasmid unclonability p-value | 0.477148 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 10 |
Fosmid unclonability p-value | 0.899041 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGACCCCCA CCTTCGACAC CCTCGACGCC GCCGCCGGCG CCCGTGCGCG CAGCCAGGCC CGCAAGGCCG CGATCGGCAG CTTCGTCGGC GCCGTCGTCG ACTGGTACGA CTTCCTGCTG TACGGGATCG TCGCCGCGCT GGTGTTCAAT TCCGAGTTTT TCCCGAAAGT CAGTCCGACG ATGGGCACGC TCGCGGCGTT CGCCACCTTC GGCGTCGGCT TCCTGTTCCG GCCGCTCGGC GGCATCGTGT TCGGTCACTA CGGCGACCGG CTCGGCCGCA AGCGGATGCT CGTGCTGACC GTGATGCTGA TGGGGCTGTC GACGGTCGCG ATCGGCCTAC TGCCGGCGTT CTCGACGATC GGCTGGTGGG CGCCCGTGCT GCTGGTGCTG ATGCGCGCGA TCCAGGGTTT CGCGGTCGGC GGCGAATGGG GCGGCGCGGC GCTGATGGCG GTCGAGAGCG CGCCGAAGCA GAAGAAGGCG TTCTACAGCA GCGGCGTGCA GGTCGGCTAC GGCGTCGGGC TCGTGCTGGC CACCGGCATC GTCTCGATCC TCAGTCATAC GCTCGGCGAG GCCGCGTTCA AGTCGTGGGG CTGGCGCCTG CCGTTCGTGT TCAGCATCGT GCTGGTGCTG ATCGGGCTGT GGGTGCGCAA GAACATGGAC GAATCGCAGG AGTTCGTCGA GAAGGTCGAG CACGGCAACC GCAAGCTCCG CCTGCCGGTG CTGGAAGCGT TGACGCGCCA CCCGAAGGCG TTCCTGCTGA TCGTTGCACT GCGGCTTGCC GAGCTGTTCA CGATGTACAT CGTCACCGCG TTCGCGCTCA GCTATTCGAC GACGAACCTC GGCATGTCGC GCGACCTGTT CCTGAACATC GGCCTGCTGG TGGGCGCGGT GAGCTGCGTG ACGATCCCCT GCTTCGCGTG GCTGGCCGAT CGCTACGGCC TGCGCCGTAT CTACCTGATC GGCGCGCTGA TCGGTCTTGC GTCGGCGGTG CCGTTCTTCG TCGCGCTGGA AGCGCGGTCG ATCGCGTGGA TCGTGATCTT CTCGATCCTG TTGGCGAACG CCGCGCACGA CATGGTCGTG AGCGTCCAGC AGCCGTTGTT CACCGAGCTG TTCGGCGCCG AATACCGCTA CAGCGGCGCG GGTGTCGGCT ACCAGTTCGC GAGCGTCGTC GGCGGCGGGT TCACGCCGTT CATCGCGGTC GGCCTCGTCA GCGTGGCCGG CGGTTCGTGG CACCTCGTCG CCGGCTACCT GGCGGTCGGT TGCCTGATCT CGCTGGTGGT CGCCGCGCGG ATGCGGGCGG CGCGATGA
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Protein sequence | MTPTFDTLDA AAGARARSQA RKAAIGSFVG AVVDWYDFLL YGIVAALVFN SEFFPKVSPT MGTLAAFATF GVGFLFRPLG GIVFGHYGDR LGRKRMLVLT VMLMGLSTVA IGLLPAFSTI GWWAPVLLVL MRAIQGFAVG GEWGGAALMA VESAPKQKKA FYSSGVQVGY GVGLVLATGI VSILSHTLGE AAFKSWGWRL PFVFSIVLVL IGLWVRKNMD ESQEFVEKVE HGNRKLRLPV LEALTRHPKA FLLIVALRLA ELFTMYIVTA FALSYSTTNL GMSRDLFLNI GLLVGAVSCV TIPCFAWLAD RYGLRRIYLI GALIGLASAV PFFVALEARS IAWIVIFSIL LANAAHDMVV SVQQPLFTEL FGAEYRYSGA GVGYQFASVV GGGFTPFIAV GLVSVAGGSW HLVAGYLAVG CLISLVVAAR MRAAR
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