Gene Bcen2424_4241 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagBcen2424_4241 
Symbol 
ID4452110 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameBurkholderia cenocepacia HI2424 
KingdomBacteria 
Replicon accessionNC_008543 
Strand
Start bp1172773 
End bp1173864 
Gene Length1092 bp 
Protein Length363 aa 
Translation table11 
GC content65% 
IMG OID639696298 
Productporin 
Protein accessionYP_837869 
Protein GI116692336 
COG category[M] Cell wall/membrane/envelope biogenesis 
COG ID[COG3203] Outer membrane protein (porin) 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones17 
Plasmid unclonability p-value0.0294588 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones
Fosmid unclonability p-value0.0402554 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAAGTCAC GCGCAGAACG TTCGATTCGA ACAGTAGTCC TCACCGGTTC AGCCGCGGCC 
GCCTGCCTCG CCGCGCCGGC CGCGCACGCG CAGTCGTCGG TCACGATGTA CGGGATCATG
GACGCCGGCA TCGAATTCAC GAACCATGCG GCACCACAAG GCGGCAATTC GGTCAAGCTG
AAGTCGGGCA ACAAGAACAC GTCGCGCTGG GGCCTGCGCG GCGTCGAGGA TCTCGGCGGC
GGGCTGAAGG CCGTGTTCCG GCTCGAAAGC GGAATCGACC TCGCGAACGG CGCCTCGGAC
GACGGCCCCG ACTCGATCTT CGCGCGCCGC GCGACGGTCG GTCTGAAAGG GAAATGGGGC
GAGCTGTCGC TCGGCCGCAA CTTCACCGTC ACTTACGATT ACATGCTGCC GTTCGACCCG
ATGGGTTACG CGCAGAACTA CTCGTGGGCG ACCTCGTCGA TGGCGACCGG CGGCCGCAAG
GACGGCCTGT TCACGCGCTC GTCGAACGCG GTGCGCTACG ACGGCGAATT CAGCGGCTTC
AAGTTCGGCG CGCTGTACGG GTTCGGCAAC GTGCCGGGCA GCATGAAGAC CAGCTCGAAA
TACGATTTCG CGGTGGGCTA CGAGACGGGG CCATTCGCGG CGGTCGTCAC GTTCGACCGG
CAGAACGGCG CGGCCGACAG CGTCACGCCG GCCGATACAG TCAACTACAT TCAGGGCATC
CACGCGGGCC TGAGCTACGA CTTCGGCAAC CTGAAGACGA TGGCCGGCTA TCGCAACTAT
CGGCGCACGT TCCACACCAC GGCCGCGAAC CAGTTGAGCG ACATGTATTG GCTCGGCGGG
TCGTACCAGT TCACGCCGAC GTTCTCGCTG ATCGCGGCCG TCTATCACCA GAACATCAAG
GGCGGCACGG ATACCGATCC GACGCTGGTG TCGGTGCGTG CGCAGTACGC GCTGTCGAAG
CGCACGGTGC TGTATGCGGC CGGGGCGTTC GCGATCGCGA AACACGACCA GAAGGTCGGC
GTGTCGCGCG ATTTCAACGG GTATGGCACC ACGCAGGTCG GGGTGACGGC GGGGATTCAG
CAGCGGTTTT GA
 
Protein sequence
MKSRAERSIR TVVLTGSAAA ACLAAPAAHA QSSVTMYGIM DAGIEFTNHA APQGGNSVKL 
KSGNKNTSRW GLRGVEDLGG GLKAVFRLES GIDLANGASD DGPDSIFARR ATVGLKGKWG
ELSLGRNFTV TYDYMLPFDP MGYAQNYSWA TSSMATGGRK DGLFTRSSNA VRYDGEFSGF
KFGALYGFGN VPGSMKTSSK YDFAVGYETG PFAAVVTFDR QNGAADSVTP ADTVNYIQGI
HAGLSYDFGN LKTMAGYRNY RRTFHTTAAN QLSDMYWLGG SYQFTPTFSL IAAVYHQNIK
GGTDTDPTLV SVRAQYALSK RTVLYAAGAF AIAKHDQKVG VSRDFNGYGT TQVGVTAGIQ
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