Gene Bcen2424_4127 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagBcen2424_4127 
Symbol 
ID4452865 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameBurkholderia cenocepacia HI2424 
KingdomBacteria 
Replicon accessionNC_008543 
Strand
Start bp1035172 
End bp1036710 
Gene Length1539 bp 
Protein Length512 aa 
Translation table11 
GC content67% 
IMG OID639696185 
ProductEmrB/QacA family drug resistance transporter 
Protein accessionYP_837756 
Protein GI116692223 
COG category[G] Carbohydrate transport and metabolism 
COG ID[COG2814] Arabinose efflux permease 
TIGRFAM ID[TIGR00711] drug resistance transporter, EmrB/QacA subfamily 


Plasmid Coverage information

Num covering plasmid clones23 
Plasmid unclonability p-value0.648562 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones10 
Fosmid unclonability p-value0.843392 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
TTGAACCCCG CCGCCGACGC CGCCGATACC CCCTCCTCGC CCGCCCTGAA CCGGCCGATG 
CTGACCCTGT CGATCATGCT CGCCACGCTG ATCCAGACCC TCGACAGCAC CATCGCGAAC
GTCGCGCTGC CGCACATGCA GGGCACGCTG TCCGCGTCGC AGGACGAAAT CACGTGGGTG
CTGACCTCCT ACATCGTCGC GGCGGCGATC GCGACGCCGC TCACCGGCTG GCTGTCCGAC
CGGCTCAGCG TGAAGCGGCT GCTGATCGTA TCGATTGCGG GCTTCACGGT GGCGTCGGCG
CTGTGCGGGC TGTCGGAGAC GCTCGTGCAG ATCGTCGGCG CGCGGCTGCT GCAGGGTGTG
TTCGGCGCCG CACTGGTGCC GCTGTCGCAA TCGATCCTGC TCGACATCAA TCCGCGCGAG
AAACAGGGCC AGGCAATGGC GATCTGGGGA ATGGGCGTGA TGGTCGGCCC CATTCTCGGC
CCGACGCTCG GCGGCTGGCT CACCGACAGC TACAACTGGC GCTGGGTGTT CTTCATCAAC
GTGCCGATCG GCGCGTTCGC GCTCGCCGGC GTGATGACCT TCCTGCCGGC ACGCGCGCCG
CGTCCGCACG TGAAATTCGA CGCGTTCGGC TTCGCGACGC TCGCGCTCGC GATCGGCGCG
TTCCAGGCGA TGCTCGATCG CGGCGAGCAG CTCGACTGGT TCGGTTCGTA CGAGATCCGC
ATCGAGGCGC TCGTCGCGGC CCTGAGCTTC GCGTTCTTCC TCGCACACAC GGCGACCGTC
GGCAAGGCGT CGTTCTTCAA GTCGGAATTG CTGCGCGATC CGAATTTCGC GACGGGCACG
CTGTTCATCT TCGTGGTCGG CGCGGTGCTG TATGCCACTC GCGCGCTGCT GCCGCCGATG
CTGCAGAACC TGATGGGCTA TCCGGTCGCG ACGACGGGCC TCGTCACCGC GCCGAGCGGC
GCCGGCACGA TGATCGCGAT GCTGTTCGTC GGGAGGCTGC TGAAATACGT GGATGCGCGG
ATGCTGCTGC TCGCCGGGCT GGCGATTTCC GCGCTCGCGC TGTGGCAGAT GATGCAGTAC
ACGATCGTGC TGTCCGAAGC GGACATCGTA TGGCCCGGCG TGATCCAGGG CTTCGGCCTC
GGGCTCGTGT TCGTGCCGCT GAGCGCGCTG TCGTTCTCGA CGCTGCCGCC CGAGCTGCGC
GCGGACGGCA CGGCCACCTA CAGCCTGATG CGCAACATCG GCAGCAGTAT CGGCATCTCG
ATCGTGCAGA CGCTGATGAC GCGCAACACG CAGGTCGCGC ATGCCGACCT CGCGACCCAC
ATCACGCCGT TCGACCCGGC CGTGCAGGCG CTGGCCGGCA GCCGTGTCGA CCTCGCGCTG
CTCGACCGCA CGATCAACCA GCAGGCCGCG ATGATCGCGT ACCTGAACGA TTTCAAGCTG
ATGTTCGTCG CGACGCTGCT GATGATCCCG CTGTTGCTGC TGATCCGCCC GCCGCAGAAA
ACGGCGAGTG TCGACGTCGC GCATGCGGCG CTGGATTGA
 
Protein sequence
MNPAADAADT PSSPALNRPM LTLSIMLATL IQTLDSTIAN VALPHMQGTL SASQDEITWV 
LTSYIVAAAI ATPLTGWLSD RLSVKRLLIV SIAGFTVASA LCGLSETLVQ IVGARLLQGV
FGAALVPLSQ SILLDINPRE KQGQAMAIWG MGVMVGPILG PTLGGWLTDS YNWRWVFFIN
VPIGAFALAG VMTFLPARAP RPHVKFDAFG FATLALAIGA FQAMLDRGEQ LDWFGSYEIR
IEALVAALSF AFFLAHTATV GKASFFKSEL LRDPNFATGT LFIFVVGAVL YATRALLPPM
LQNLMGYPVA TTGLVTAPSG AGTMIAMLFV GRLLKYVDAR MLLLAGLAIS ALALWQMMQY
TIVLSEADIV WPGVIQGFGL GLVFVPLSAL SFSTLPPELR ADGTATYSLM RNIGSSIGIS
IVQTLMTRNT QVAHADLATH ITPFDPAVQA LAGSRVDLAL LDRTINQQAA MIAYLNDFKL
MFVATLLMIP LLLLIRPPQK TASVDVAHAA LD