| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bcen2424_4120 |
|---|
| Symbol | |
|---|
| ID | 4452720 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Burkholderia cenocepacia HI2424 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008543 |
|---|
| Strand | - |
|---|
| Start bp | 1026947 |
|---|
| End bp | 1028143 |
|---|
| Gene Length | 1197 bp |
|---|
| Protein Length | 398 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 70% |
|---|
| IMG OID | 639696178 |
|---|
| Product | thiamine pyrophosphate binding domain-containing protein |
|---|
| Protein accession | YP_837749 |
|---|
| Protein GI | 116692216 |
|---|
| COG category | [E] Amino acid transport and metabolism
[H] Coenzyme transport and metabolism
[R] General function prediction only |
|---|
| COG ID | [COG0028] Thiamine pyrophosphate-requiring enzymes [acetolactate synthase, pyruvate dehydrogenase (cytochrome), glyoxylate carboligase, phosphonopyruvate decarboxylase]
[COG4032] Predicted thiamine-pyrophosphate-binding protein |
|---|
| TIGRFAM ID | [TIGR03297] phosphonopyruvate decarboxylase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 20 |
|---|
| Plasmid unclonability p-value | 0.183201 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 11 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGATCGAAG CGGCCCAGTT CGTCGAGGCC GCGCGCGAAC GCGGCTTCGA CTGGTACGCG
GGCGTGCCCT GCTCGTACCT GACGCCGTTC ATCAATTACG TGTTGCAGGA CCCGACGCTG
CACTACGTGT CGGCCGCGAA CGAAGGCGAC GCGGTCGCGC TGATCGCAGG CGCGACGCTC
GGCGGCAAGC GCGGGATCGC GATGATGCAG AACTCGGGGC TCGGCAACGC GGTGAGCCCG
CTCACGTCGC TCACCTGGAC GTTCCGCCTG CCGCAATTGC TGATCGTCAC GTGGCGCGGC
CAGCCGGGCG TGGCCGACGA GCCGCAGCAC GCGCTGATGG GCCCGATCAC GCCCGCGATG
CTCGATACGA TGGAGATTCC GTGGGAGACG TTCCCGACCG ACCCCGAACA GGTCGGCCCG
GCGCTCGACC GCGCGATCGC GCACATGGAC GAAACGGGCC GCCCGTACGC GCTCGTGATG
CAGAAAGGCA GCGTCGCGCC GTATGAGCTG AAGGCGAACC CGGCCGCGAA GCCGCGTGCG
CACGTCGCCG CGCAATCGGC GTCGGGCGCG GCGTCGGCCG ATGCGTGGCC GACCCGTCAC
GACGCGCTGC AGCGCGTGAT CGCGCATACG CCGGTCGATT CGACCGTCGT GCTCGCGTCG
ACCGGTTTCT GCGGTCGCGA ACTCTACGCG CTCGACGATC GCCCGAACCA GCTGTACATG
GTCGGCTCGA TGGGCTGCGT GACGCCGCTC GCGCTCGGCC TCGCGCTCGC GCGCCCCGAC
CTGCACGTGG TGGCCGTCGA CGGCGACGGC GCCGCGCTGA TGCGCATGGG CGTGTTCGCG
ACGCTCGGCA CCTACGGCCC GGCCAACCTC ACGCACGTGC TGCTCGACAA CGGCGCGCAC
GAATCGACGG GCGGCCAGGC GACGGTGTCG CAGCATGTGT CGTTCGCGGG TGTCGCGGCC
GCGTGCGGCT ACGCGTCGGC GGTCGAAGGC GATACGCTCG ACGTGCTCGA TGCGACGCTT
TCCACTCAAG CCGACGGGGT CCGGCCATCC GGTGTGCAGT TCGTTCGCGT GGGGATCCGC
ACGGGCGTAC CCGACGGCCT GCCCCGCCCG ACCGTCACGC CGGTCGAGGT CAAGACCCGT
CTGATGCGGC ACATCGGCGC CGCGCAGACC GAAGCCCACG TTGAAGGAGC CCATTGA
|
|---|
| Protein sequence | MIEAAQFVEA ARERGFDWYA GVPCSYLTPF INYVLQDPTL HYVSAANEGD AVALIAGATL
GGKRGIAMMQ NSGLGNAVSP LTSLTWTFRL PQLLIVTWRG QPGVADEPQH ALMGPITPAM
LDTMEIPWET FPTDPEQVGP ALDRAIAHMD ETGRPYALVM QKGSVAPYEL KANPAAKPRA
HVAAQSASGA ASADAWPTRH DALQRVIAHT PVDSTVVLAS TGFCGRELYA LDDRPNQLYM
VGSMGCVTPL ALGLALARPD LHVVAVDGDG AALMRMGVFA TLGTYGPANL THVLLDNGAH
ESTGGQATVS QHVSFAGVAA ACGYASAVEG DTLDVLDATL STQADGVRPS GVQFVRVGIR
TGVPDGLPRP TVTPVEVKTR LMRHIGAAQT EAHVEGAH
|
|---|
| |