Gene Bcen2424_3952 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagBcen2424_3952 
Symbol 
ID4452071 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameBurkholderia cenocepacia HI2424 
KingdomBacteria 
Replicon accessionNC_008543 
Strand
Start bp830819 
End bp831886 
Gene Length1068 bp 
Protein Length355 aa 
Translation table11 
GC content67% 
IMG OID639696011 
Product3-isopropylmalate dehydrogenase 
Protein accessionYP_837582 
Protein GI116692049 
COG category[C] Energy production and conversion
[E] Amino acid transport and metabolism 
COG ID[COG0473] Isocitrate/isopropylmalate dehydrogenase 
TIGRFAM ID[TIGR00169] 3-isopropylmalate dehydrogenase 


Plasmid Coverage information

Num covering plasmid clones29 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones
Fosmid unclonability p-value0.201991 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAAGATTG CAGTGCTGCC CGGCGACGGC ATCGGTCCGG AAATCGTCAA TGAAGCGGTG 
AAGGTGCTGA ACGCACTCGA CGAGAAGTTC GAACTCGAAC AGGCGCCGGT CGGCGGCGCG
GGCTACGAGG CGAGCGGCCA TCCGCTGCCC GACGCGACGC TGGCGCTCGC GAAGCAGGCC
GACGCGATCC TGTTCGGCGC GGTCGGCGAC TGGAAGTACG ACTCGCTGGA GCGCGCGCTG
CGCCCCGAGC AGGCGATTCT CGGGCTGCGC AAGCACCTCG AGCTGTTCGC GAACTTCCGC
CCGGCGATCT GCTATCCGCA GCTCGTCGAT GCGTCGCCGT TGAAGCCGGA GCTCGTCGCG
GGCCTCGACA TCCTGATCGT GCGCGAACTG AACGGCGACA TCTACTTCGG CCAGCCGCGC
GGCGTGCGCG CGGCGCCGGA CGGCCCGTTC GCCGGCGAGC GCGAAGGCTT CGACACGATG
CGCTATTCGG AGCCGGAAGT GCGCCGCATC GCGCACGTCG CGTTCCAGGC CGCGCAAAAG
CGCGCGAAGA AGCTGCTGTC GGTGGACAAG TCGAACGTGC TGGAAACGTC GCAGTTCTGG
CGCGACATCA TGATCGACGT GTCGAAGGAA TACGCGGACG TCGAGCTGTC GCACATGTAC
GTCGACAACG CGGCGATGCA GCTCGCGAAG GCGCCGAAGC AGTTCGACGT GATCGTCACG
GGCAACATGT TCGGCGACAT CCTGTCGGAT GAAGCGTCGA TGCTGACGGG TTCGATCGGC
ATGCTGCCGT CGGCGTCGCT CGACAAGCAC AACAAGGGGC TGTACGAGCC GTCGCACGGT
TCGGCGCCGG ACATCGCGGG CAAGGGCATC GCGAACCCGC TCGCGACGAT CCTGTCGGCC
GCGATGCTGC TGCGCTACTC GCTGAATCGC GCGGAGCAGG CCGATCGCAT CGAGCGCGCG
GTGAAAACGG TGCTCGAACA GGGTTATCGC ACGGGCGACA TCGCGACGCC GGGCTGCAAG
CAGGTCGGCA CGGCGGCGAT GGGCGACGCG GTGGTCGCCG CGCTGTAA
 
Protein sequence
MKIAVLPGDG IGPEIVNEAV KVLNALDEKF ELEQAPVGGA GYEASGHPLP DATLALAKQA 
DAILFGAVGD WKYDSLERAL RPEQAILGLR KHLELFANFR PAICYPQLVD ASPLKPELVA
GLDILIVREL NGDIYFGQPR GVRAAPDGPF AGEREGFDTM RYSEPEVRRI AHVAFQAAQK
RAKKLLSVDK SNVLETSQFW RDIMIDVSKE YADVELSHMY VDNAAMQLAK APKQFDVIVT
GNMFGDILSD EASMLTGSIG MLPSASLDKH NKGLYEPSHG SAPDIAGKGI ANPLATILSA
AMLLRYSLNR AEQADRIERA VKTVLEQGYR TGDIATPGCK QVGTAAMGDA VVAAL