| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bcen2424_3814 |
|---|
| Symbol | |
|---|
| ID | 4451643 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Burkholderia cenocepacia HI2424 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008543 |
|---|
| Strand | + |
|---|
| Start bp | 675189 |
|---|
| End bp | 676457 |
|---|
| Gene Length | 1269 bp |
|---|
| Protein Length | 422 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 73% |
|---|
| IMG OID | 639695872 |
|---|
| Product | RNA polymerase ECF-subfamily sigma factor |
|---|
| Protein accession | YP_837444 |
|---|
| Protein GI | 116691911 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG4941] Predicted RNA polymerase sigma factor containing a TPR repeat domain |
|---|
| TIGRFAM ID | [TIGR02937] RNA polymerase sigma factor, sigma-70 family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 33 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 8 |
|---|
| Fosmid unclonability p-value | 0.323784 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGACGCATG AGGCGACGCA TCGTGCGATC GAAGCGGTCT GGCGAATCGA GGCGCCGAAA
ATCATCGCGC GGGCCGCGCG GGTGGTGCGC GACGTCGGCG TGGCCGAGGA ACTGGCGCAG
GACACGCTCG TCGCGGCGCT CGAGCACTGG CCCGTCGACG GCGTGCCCGA CAACCCGGCC
GCCTGGCTGA TGACGGCCGT GAAGCGGCGC GCGCTCGACC GGGTCCGGCA GGAGTCGCTT
CATGCGGCGA AGCGCGACCA GCTCGGCCAC GAGATGGACG CGCTCGAGGC GCACGTCGTC
CCCGACATCG CGGACGCGAT CGCCGATGCG GGCGACGACG ACATCGGCGA CGACCTGCTG
CGGCTGATCT TCACGTCGTG CCACCCGGTG CTGTCGACCG ACGCGCGCGT CGCGCTGACG
CTGCGGCTGC TCGGCGGGCT GACGACGGGC GAGATCGCGC GCGCATTCCT GACGCCGGAG
CCGACGATCG CGCAGCGGAT CGTGCGCGCG AAGCGCACGC TCGCGGCGGC GCACGTGCCG
TTCGAGGTGC CAGCGGCCGA TGCGCGGCCG GCGCGGCTCG CGTCCGTGCT TGAAGTGATC
TACCTCGTGT TCAACGAAGG CCATGCGGCG ACTGCCGGCG ACGACTGGAT GCGTCCGGCG
CTGTGCGACG AGGCGTTGCG CCTCGGCCGC GTGCTGGCCG GGCTGGCGCC GGACGAAAGC
GAAGTGCTCG GGCTCGTCGC GCTGATGGAA CTGCAGGCGT CGCGCATGCA TGCCCGCGTC
GACGCGCAAG GCCGGCCCGT GCTGCTGCTC GACCAGGACC GCAGCCGCTG GGATCCGTTG
CTGATCCGGC GCGGCCTCGC GGCGCTGGAG CGGGCGACGA AGCTCGGCGG CGTGCGCGGG
CCGTATGCGC TGCAGGCCGC GCTCGCCGCG TGCCATGCGC GTGCGCGACA GGCGGCGGAC
ACGGACTGGG CGCAGATCGT CGCGCTGTAT GACGCGCTCG CCGAAGTCGC GCCGTCGCCG
GTCGTCGAAC TCAATCGCGC GGTGGCGGTG GGGATGGCGT TCGGGCCGGC CGCGGCGCTC
GAACTCGTCG ACGTGCTGCG CGACGATCCG GCGCTCGCGC GCTATCACTG GCTGCCGAGC
GTGCGCGGCG ATCTGCTCGC GAAGCTCGGC CGTGCCGACG AGGCGAAGCT GGAGTTCCGC
CGCGCGGCGG AGTTGACGCG CAACGAACGT GAGCGCGAGT TGCTGCTCAA GCGTGCGATG
GATGCGTGA
|
|---|
| Protein sequence | MTHEATHRAI EAVWRIEAPK IIARAARVVR DVGVAEELAQ DTLVAALEHW PVDGVPDNPA
AWLMTAVKRR ALDRVRQESL HAAKRDQLGH EMDALEAHVV PDIADAIADA GDDDIGDDLL
RLIFTSCHPV LSTDARVALT LRLLGGLTTG EIARAFLTPE PTIAQRIVRA KRTLAAAHVP
FEVPAADARP ARLASVLEVI YLVFNEGHAA TAGDDWMRPA LCDEALRLGR VLAGLAPDES
EVLGLVALME LQASRMHARV DAQGRPVLLL DQDRSRWDPL LIRRGLAALE RATKLGGVRG
PYALQAALAA CHARARQAAD TDWAQIVALY DALAEVAPSP VVELNRAVAV GMAFGPAAAL
ELVDVLRDDP ALARYHWLPS VRGDLLAKLG RADEAKLEFR RAAELTRNER ERELLLKRAM
DA
|
|---|
| |