Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Bcen2424_3746 |
Symbol | |
ID | 4453031 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Burkholderia cenocepacia HI2424 |
Kingdom | Bacteria |
Replicon accession | NC_008543 |
Strand | + |
Start bp | 601713 |
End bp | 604265 |
Gene Length | 2553 bp |
Protein Length | 850 aa |
Translation table | 11 |
GC content | 61% |
IMG OID | 639695805 |
Product | Rhs element Vgr protein |
Protein accession | YP_837377 |
Protein GI | 116691844 |
COG category | [S] Function unknown |
COG ID | [COG3501] Uncharacterized protein conserved in bacteria |
TIGRFAM ID | [TIGR01646] Rhs element Vgr protein [TIGR03361] type VI secretion system Vgr family protein |
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Plasmid Coverage information |
Num covering plasmid clones | 22 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 4 |
Fosmid unclonability p-value | 0.0271118 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGGGTAGGT TGCCCAATTC GTTGATGCTT GACGCGGGTA TCGAGCAGAC GAACCGAGCG CTCGTCCTGG AAACGCCCCT CGGGGCGAAG GTACTGTTGC CGCAACGCGC CATGGGCGAA TCGCGCGTGG GCCGGGATTT CGAGCTCACA GTGGACGTCG TGTCCCGGGA GCGCGCGCTT CATTTGAAGA AGCTGATGGC GCAACCTGTC ACATTATGGG TGCGTCAAGC CGACGAGTCG TACCTGCCTT GGCATGGCTA CGTCCATGCA ACGCGACGCC TCGGAGCGGA CGGGGGACTC ACTTACTATC AGCTTTCGTT TTCGTCGTGG ATGCGCTTTC TGCAGTACCG CAAGGACGCG CGCATTTTCC AGGACCTAAC GACCGCCGAC ATCCTGACTA AAGTGTTCAG CGGCCATTCG CCGGCGCGCG GTCATTTCCG GCTCGATGTG AAAGACCCGG GCGCGGTTCG CTCGTACTGT ACTCAGTACG AAACCGACCA CAATTTCGTC CATCGGTTGA TGGAGTCGGA GGGATGGTTC ACGTATGTCG AGCATGCAGA GGACGGTAAG TCGCATACGA TTGTCGTGAC CGACGACCTC TTCAATTGCA AAGCGCTCGC TACCCAGCGA GTACCGTTCT ATCGCGGCGA CCGAGACGGC CAGGCTGGCA CACTCGTCGA ATGGAGCGGC GAGCGTACGA CGCAAAGCGT CGGATATGCG TTCAGCACGG CGGATTACAA ACGTCCAGCG CGCACGTTGC AGCGGGCGGA CCGGTCCACG GTTGACCAAG GCGATATCCC GCAGGAGTTG GAAGTCTACG AATACGCGGG CCACTATAGC TTTCCGGTCA CCGGCGAGTC CTACGACCGT GGCGAGCGCG CTATGCGAAT TCGGCTTGAA GAGATGGCCT CGCGCAGCAA ACGGTTTTTC GGGGTGGGCA GTGTTCCGTG CATGGACGCC GGTCGATGGT TCACGCTCGA AGACCATCCC GAGCACGACG CAGACAAGCC TGAGGACCGC GAGTTCGCGA TTCTTGGCGT GCGTTGGGCT ATCCAGAACA ATCTGCCGCT GGGCAACAGC CGCCCCTTTC CGGGTAGCCT GCAGCGACGC CTGTCGCGTC TGCGTGCCGA ATACAAGGAC CGGCAGGCCG CATTCGTATC GAAGGACCCG TTAGGCAATG AAAGTTTCGT GCTGGCCGAA ATCGAGGTCC AGCGCCGCTC GGTGCCATTC CGCAGCCCAT TCGAGCACAG AAAGCCGGTC ATGCATATGC AGACCGCCAC TATCGTGGGA CCGGCGGGTG AGGAGGTATA CACGGACGAG TTGAACCGGG TGAAGGCTCA GATGCACTGG GACCGTCTGG GGAGCAATAA CGAGACGTCA TCGTGCTGGA TGCGGGTAAT ACTGCCGCAC GCCGGCAAGG GATTCGGCGG TGTGTTCGTC CCTCGAATCG GGCAGGAAGT GGCCGTCAAT TACCTCGACG GGGATTGCGA CCGGCCGGTC GTCAGTGGAG TGCTCTTTCA CTCTGTCAAC ACGCCACATT GGCATTCGAA CGGCCTGCTG TCCGGTTTCA AGTCGCAGGA GTACAGCGGT CAGGGTTTCA ATCAACTCGT CTTCGACGAC TCCACGTCGC AGAACCGGGC GCAGCTTTTC AGCTCGACGG CGAATTCGTA TCTTCACATC GGCTATCTCA TCGACCACAG CGGCAATACG CGCGGCAACT ACCTTGGCAC GGGCTTCGAA CTGAAGACCG AGGCGTCAGG TGCCCTGCGG GCCGGACGAG GGCTCTACGT ATCGACCTAC GCCCGCGGCG GCACGTCGAG TCAGCCGCTG GATGTGAAGG AAGCCACGCA ACACCTTATC GATTCGAGCG GCGTGATTCA GCATCGCTCA CTCGCGGCAG CTGACGGCCA GGCCGAGACC CTGGACGATG CTCAGGACGC CATCAAGGAC TTCGCTGCGA CGACGCAGAG CGATGCACAG GGCTCTATGG CGGGCGGCAG GACAGCGGGT GGCGGCACCG GAAGCGCCAA TGCGTTTTCG CAACCTGTCA TGTTGCTTGC GAGCCCGGCT GACATGGGCC TGTCGACGCA GAAGTCGCTC CACGCAGCAG CTACCCAGCA CGTCAATTTG GTTAGCGGAG AGAGCACCTA CGTTTCGGTG GCGAGGTCGT GGATTGCCAG TATTGGCGAG AAATTAAGCT TCTTCGTGCA GAATGCCGGT ATCAAGCTGT TTGCCGGCAA AGGCAAGGTC GAAGTGCAGG CGCAGTCGGA CAATATCGAA CTTACGGCAG ACAAGACTGT AAAGGTCGTG TCCACTTCCG ATTCGGTGAA CGTTACAGCC CAGAAGGAAA TCACCCTTAC CGCCGGCGGC GCATCGATTC GTATCGCCGA AGGTAAAATC TTCATCCATG CGCCGGGGCT GGTCGAGGTC AAGGGCAGTC CGCTCATCTT CGATGGCCCG GCGGGCGATA GCGCGTCGGC GCAGCTTGCG CCTTCAAAGT CGTGCGCCCA GCAGTTCGCA GCCGCGGCCC AGGCCGGCTC GGCACTCGTG TAG
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Protein sequence | MGRLPNSLML DAGIEQTNRA LVLETPLGAK VLLPQRAMGE SRVGRDFELT VDVVSRERAL HLKKLMAQPV TLWVRQADES YLPWHGYVHA TRRLGADGGL TYYQLSFSSW MRFLQYRKDA RIFQDLTTAD ILTKVFSGHS PARGHFRLDV KDPGAVRSYC TQYETDHNFV HRLMESEGWF TYVEHAEDGK SHTIVVTDDL FNCKALATQR VPFYRGDRDG QAGTLVEWSG ERTTQSVGYA FSTADYKRPA RTLQRADRST VDQGDIPQEL EVYEYAGHYS FPVTGESYDR GERAMRIRLE EMASRSKRFF GVGSVPCMDA GRWFTLEDHP EHDADKPEDR EFAILGVRWA IQNNLPLGNS RPFPGSLQRR LSRLRAEYKD RQAAFVSKDP LGNESFVLAE IEVQRRSVPF RSPFEHRKPV MHMQTATIVG PAGEEVYTDE LNRVKAQMHW DRLGSNNETS SCWMRVILPH AGKGFGGVFV PRIGQEVAVN YLDGDCDRPV VSGVLFHSVN TPHWHSNGLL SGFKSQEYSG QGFNQLVFDD STSQNRAQLF SSTANSYLHI GYLIDHSGNT RGNYLGTGFE LKTEASGALR AGRGLYVSTY ARGGTSSQPL DVKEATQHLI DSSGVIQHRS LAAADGQAET LDDAQDAIKD FAATTQSDAQ GSMAGGRTAG GGTGSANAFS QPVMLLASPA DMGLSTQKSL HAAATQHVNL VSGESTYVSV ARSWIASIGE KLSFFVQNAG IKLFAGKGKV EVQAQSDNIE LTADKTVKVV STSDSVNVTA QKEITLTAGG ASIRIAEGKI FIHAPGLVEV KGSPLIFDGP AGDSASAQLA PSKSCAQQFA AAAQAGSALV
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