Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Bcen2424_3678 |
Symbol | |
ID | 4451787 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Burkholderia cenocepacia HI2424 |
Kingdom | Bacteria |
Replicon accession | NC_008543 |
Strand | + |
Start bp | 528416 |
End bp | 529885 |
Gene Length | 1470 bp |
Protein Length | 489 aa |
Translation table | 11 |
GC content | 70% |
IMG OID | 639695736 |
Product | RND family efflux transporter MFP subunit |
Protein accession | YP_837309 |
Protein GI | 116691776 |
COG category | [M] Cell wall/membrane/envelope biogenesis |
COG ID | [COG0845] Membrane-fusion protein |
TIGRFAM ID | [TIGR00999] Membrane Fusion Protein cluster 2 (function with RND porters) [TIGR01730] RND family efflux transporter, MFP subunit |
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Plasmid Coverage information |
Num covering plasmid clones | 19 |
Plasmid unclonability p-value | 0.235354 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 11 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGTCACGCA GCAGAATCTT CGTTATTGCG GCGGCCGTGC TCGGCGGCGC AGGGATCGTG ATCGGCGCGC TCGCCGTCAC GCGGGGCGGC AGCAGCGCAT CGGCGCCGCC GGCCGCCGAT GCCGCGCAGC CGGCCGAGGG CGCCGGTGCG CGCGGCGGTG TCGTGCTGAA GCGCGGCAAG CTGTCCGTCG AGATCGTGAT GACGGAAAAG CCGGGCGACG CGCGGCTCGT CGTCTATCCG TTCGTCGACG GCAAGCCGGT GGACAAGGGC GTGACCGTGT CCGGCACGCT GGTGCGGTAC GACCGCACGC ACGAGCCGTT GCGATTCGAC GCGGCCGGCC AGAAGTTCGT GTCCGCGCAG CCGATCGCGA AGCCGCACGT GTTCGATGCG ACGATCGACG TAAAGGCCGG CAACGACGCC GCGTCGTTCC CGTTCGCGCG CGCCGACGGC GCGATCGCGC TGACCGACGC GCAACTGGCG ACGTCGAAGA TCGCGCTCGC GAAAGCCGGC CCCGCACAGA TCGCGACGCC GTTCCAGCTT CCCGGCGAAA TCAAGTTCAA CGAGGATCGC ACCGCGCACG TGGTGCCGCG CGTGGCCGGC ATCGTCGAGC AGGTGTCGGT ATCGCTCGGC CAGAACGTCG CGAAAGGGCA GGTGCTCGCC GTGATCGCGA GCACCGATCT GGCCGACCGC CGCAGCGAGC TGCTGACGGC CGAGCGCCGG CTGTCGGGTG CGCGCGCAAC CTACGAACGC GAACGCACGC TGTGGAAGGA GCGCATTTCG GCCGAGCAGG ATTACCAGCA GGCGCAGGTG CAGTTGCGCG AGGCCGAGAT CGCCGTGCAG AACGCGCGGC AGAAGCTCGC CGCGCTGAAT GCGCCGGTCG GCGCGGGCGC GCTGAACCGT TATGAACTGC GCGCGCCGTT CGCGGGCACG ATCGTCGAGA AGCATGCGAC GCCCGGCGAG GCGATTGCCG CCGACGCGAG CATGTTCGTG ATCTCCGACC TGTCGACCGT GTGGGCCGAG ATGGCGGTGC CCGCGCAGCG GCTCAACGAC GTGCGCGTCG GTCGCGATGC CACGGTGAGC GCGACCGCGT TCGAATCGCG TTCGAGCGGC CCGATCGCGT ACGTGGGGTC GCTGCTCGGC GAGCAGACGC GCACCGCGCC GGCGCGCGTC GTGCTGCCGA ACCCGGATCG CGTGTGGCGC CCGGGAATGT TCGTGAACGT GTCGGTCGAC GCGGGCAGGC AGGCCGTGCC GCTCGCGGTC GCGAGCGACG CGTTGCAGGA CGTCGACGGT GCGCCGTCGG TGTTCGTGCG CTCGCCGAAG GGCTTCGTCG CGCAGGCGGT CGAAACCGGG CGGCGCGACG AACGCGCGAC CGAGGTGCTG AAGGGGCTCA AGCCCGGCCA GGAATACGCG GTGTCGAACA GTTTCGTGCT GAAGGCGGAG CTCGGCAAGG GGAGCGCGGA ACATGAATGA
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Protein sequence | MSRSRIFVIA AAVLGGAGIV IGALAVTRGG SSASAPPAAD AAQPAEGAGA RGGVVLKRGK LSVEIVMTEK PGDARLVVYP FVDGKPVDKG VTVSGTLVRY DRTHEPLRFD AAGQKFVSAQ PIAKPHVFDA TIDVKAGNDA ASFPFARADG AIALTDAQLA TSKIALAKAG PAQIATPFQL PGEIKFNEDR TAHVVPRVAG IVEQVSVSLG QNVAKGQVLA VIASTDLADR RSELLTAERR LSGARATYER ERTLWKERIS AEQDYQQAQV QLREAEIAVQ NARQKLAALN APVGAGALNR YELRAPFAGT IVEKHATPGE AIAADASMFV ISDLSTVWAE MAVPAQRLND VRVGRDATVS ATAFESRSSG PIAYVGSLLG EQTRTAPARV VLPNPDRVWR PGMFVNVSVD AGRQAVPLAV ASDALQDVDG APSVFVRSPK GFVAQAVETG RRDERATEVL KGLKPGQEYA VSNSFVLKAE LGKGSAEHE
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