| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bcen2424_3677 |
|---|
| Symbol | |
|---|
| ID | 4451786 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Burkholderia cenocepacia HI2424 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008543 |
|---|
| Strand | + |
|---|
| Start bp | 527070 |
|---|
| End bp | 528389 |
|---|
| Gene Length | 1320 bp |
|---|
| Protein Length | 439 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 71% |
|---|
| IMG OID | 639695735 |
|---|
| Product | outer membrane efflux protein |
|---|
| Protein accession | YP_837308 |
|---|
| Protein GI | 116691775 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis
[U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG1538] Outer membrane protein |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 23 |
|---|
| Plasmid unclonability p-value | 0.621392 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 11 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCTCAAGC TCAACCTCAA CCTCGTCGCG GCCATCGTCT TCGTGATGGT CGCGACGGCT
CATGCGCAGC CATTGCTGAC GCCGGGCCCG GGCGCCGCTG CCGCCAGCAG CGCGACGCCG
ATCGGCGCTC CCCCATCCGA TACGCTCCCC GCGTCGTCAT TGACGCTCTC CGATGCGCTC
GCGGTCGCGG CGCGGAACAA TCCGGCGCTG CGCGGCGCAC GCGCGGATGT CGATGCGTCG
GCCGGCGCGC TGATGCAGGC CGGCGCGCGG CCCAATCCTG AGGTGTCGTT CCTGCAGGAG
GGCTTCAGCC GCGCCGAACG CACGTCGACC GCATTGATCA ACCAGACCAT CGAACTGGGC
GGCAAGCGCC GCGCGCGGCT CGACGTGGCG TCGTACGGCC GCGAGGCGGC CAACGCGTCG
CTCGACGAGC AGGGCGCGGC CGTGCGTGCC GACGTGATCG CCGCGTTCTA CGGGCTGCTC
GCCGCGCAGC GCCAGCTTCA GGTGACCGAG GAATCGGCCG CGATCGCGGC GCGCTCGGCG
GATCTCGCGG GGCGTCGCGC GCAGGCCGGC AAGGTGTCGC CGGTCGAGGC GACCAAGGCG
CAGGTGGCGG CGGCCGGCGT GCAGATCGAA GTCGTGACCG CGCGTGGCCG TGTCGAGGTC
GCGCGCGAAA AGCTGAACGC GGTGATGGGC GAAGCGCGCG ATGACCGCCT CGCGGTGCGC
GGCGACCTGG AAACCGTGCC GCCGGTCGAG CCGCTGTCCG CGCTGACCGT GCAACTCGAC
GACGCGCCGC TCGCGCGGGT CGCGCGTGCC GAGATGCTGC GCTCGAACGC AGCCGTGTCG
CTGGAGCGCG CGCGGCGCAT TCCGGACGTG ACGGTCAGTG CAGGCTTCAA GCGCGTGACC
ACGGGCGGCG TGCCCGAGAA CCAGGCCGTG GTCGGCGTAT CGATCCCGAT TCCGCTGTTC
AACACGAACA AGGGTGCGCT GCTCGAGGCG ACGCACAAGG CCGAGCGCGC AAACGCCGAT
CTCGATCGCG AGCGCACGCG CCTGCGGCTG GAACTGACGC AGGCATACGC GAATTTCGAG
GCCGCGGAGC AGGAAGCGCA GCGGCTGAAG GTCGACATCC TGCCGGCCGC GCGTCTCGCG
CTCGATGCGA TGTCGCGCGG CTACGAACTC GGGAAGTTCA GCTTCCTCGA TGTGCTCGAC
GCGCAGCGCA CGCTGTTCCA GGGGCAATCG CAATACGTGC GTGCGCTCGC CGGCGCCCAT
GCGGCCCGCG CCGATATCGG CCGGCTCGTC GGCACGCCGC TCGCGGCCGT CGCGCAATGA
|
|---|
| Protein sequence | MLKLNLNLVA AIVFVMVATA HAQPLLTPGP GAAAASSATP IGAPPSDTLP ASSLTLSDAL
AVAARNNPAL RGARADVDAS AGALMQAGAR PNPEVSFLQE GFSRAERTST ALINQTIELG
GKRRARLDVA SYGREAANAS LDEQGAAVRA DVIAAFYGLL AAQRQLQVTE ESAAIAARSA
DLAGRRAQAG KVSPVEATKA QVAAAGVQIE VVTARGRVEV AREKLNAVMG EARDDRLAVR
GDLETVPPVE PLSALTVQLD DAPLARVARA EMLRSNAAVS LERARRIPDV TVSAGFKRVT
TGGVPENQAV VGVSIPIPLF NTNKGALLEA THKAERANAD LDRERTRLRL ELTQAYANFE
AAEQEAQRLK VDILPAARLA LDAMSRGYEL GKFSFLDVLD AQRTLFQGQS QYVRALAGAH
AARADIGRLV GTPLAAVAQ
|
|---|
| |