| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bcen2424_3161 |
|---|
| Symbol | trmE |
|---|
| ID | 4449415 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Burkholderia cenocepacia HI2424 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008542 |
|---|
| Strand | - |
|---|
| Start bp | 3478729 |
|---|
| End bp | 3480123 |
|---|
| Gene Length | 1395 bp |
|---|
| Protein Length | 464 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 69% |
|---|
| IMG OID | 639695228 |
|---|
| Product | tRNA modification GTPase TrmE |
|---|
| Protein accession | YP_836801 |
|---|
| Protein GI | 116691178 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG0486] Predicted GTPase |
|---|
| TIGRFAM ID | [TIGR00231] small GTP-binding protein domain
[TIGR00450] tRNA modification GTPase TrmE |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 19 |
|---|
| Plasmid unclonability p-value | 0.399046 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGCTCGCTA CCGATTCCGA TCCGATCGTC GCCATTGCCA CTGCTGCCGG CCGGGGCGGC
ATCGGGGTCG TCCGCGTGTC GTTCGGGCGC GGCGGCGAGG CGGCCGCGCT GCCGTTGATC
GACGCGTTGT GCGGGCAAAA GCTCGCGCCG CGCCATGCGA GCTACGTGCC GTTCCTCGAC
GCGCATGGCG CGCCGCTCGA CCGCGGGATC GCGCTGTATT TCCCGGCGCC GCATTCGTAC
ACCGGCGAGC ACGTGCTCGA GTTGCAGGGG CATGGCGGGC CGATCGTGAT GCAGCTGCTG
CTGCAGCGCT GCCTGGATGC GGGGCGCGGC TTCGGGCTAC GGCTGGCGGA GCCGGGCGAG
TTCACGCGGC GCGCGTTCCT GAACGACAAG CTCGATCTCG CGCAGGCCGA GGCCGTCGCG
GACCTGATCG AGGCGAGCAC CGAGGCGGCC GCGCGCTCGG CCGGGCGTTC GCTCGACGGC
GCGTTCTCGC GGCAGATCCA TGCGCTCGTC GACGACGTGA TCACGCTGCG GATGCTGGTG
GAGGCGACGC TCGATTTTCC GGAGGAGGAA ATCGACTTCC TCGAAGCGGC CGACGCGCGC
GGCAAGCTCG CGAAGATCCG CGCGCAGCTC GCGCACGTGC TCGGCGATGC GCGGCAGGGC
GCGCTGTTGC GCGAAGGGCT GTCGGTCGTG CTCGCGGGGC AGCCGAACGT CGGCAAGTCG
TCGCTGCTGA ATGCGCTGGC GGGCGCCGAG TTGGCGATCG TCACGCCGAT CGCCGGCACG
ACCCGCGACA AGGTCGCGCA GACGATCCAG GTCGAGGGGA TTCCGCTGCA CATCATCGAT
ACGGCCGGGT TGCGCGAGAC GGAGGACGAA GTCGAACGGA TCGGCATTGC GCGCACGTGG
AGCGAGATCG AGCGCGCGGA CGTCGTGCTG CATCTGCTCG ATTCGCGCAC GGGGATGACG
GCGGACGACG AAACGATCGC CGCGCGGTTT CCGGCCGGCG TGCCGGTGGT GCGCGTGCTG
AACAAGACGG ATCTGACCGG CGTGCCGGCG TGCGTCGAGC ATCCGGCGGC GGAAGGCGAT
CTGACCGAGG TGCACCTGTC GGCGAAGCGC GGTGACGGGA TCGACATGCT GCGCGCGGAG
CTGCTGCGGA TTGCGGGGTG GCAGGCGGGG GCCGAGGGGG TGTATCTGGC GCGCGAGCGG
CATCTGATCG CGCTGCGGGC CGCGCAGGAA CATCTCGCGC AGGCGGCGAA TCACGCGGAG
CAGCGGGCGC AGTCGCTCGA TCTGTTTGCC GAAGAGCTGC GGCTCGCACA GGAGCAGCTC
AATGCGATTA CCGGGGAGTT CACGTCGGAT GATCTGCTGG GGGTAATTTT CAGCAGGTTT
TGTATCGGGA AGTGA
|
|---|
| Protein sequence | MLATDSDPIV AIATAAGRGG IGVVRVSFGR GGEAAALPLI DALCGQKLAP RHASYVPFLD
AHGAPLDRGI ALYFPAPHSY TGEHVLELQG HGGPIVMQLL LQRCLDAGRG FGLRLAEPGE
FTRRAFLNDK LDLAQAEAVA DLIEASTEAA ARSAGRSLDG AFSRQIHALV DDVITLRMLV
EATLDFPEEE IDFLEAADAR GKLAKIRAQL AHVLGDARQG ALLREGLSVV LAGQPNVGKS
SLLNALAGAE LAIVTPIAGT TRDKVAQTIQ VEGIPLHIID TAGLRETEDE VERIGIARTW
SEIERADVVL HLLDSRTGMT ADDETIAARF PAGVPVVRVL NKTDLTGVPA CVEHPAAEGD
LTEVHLSAKR GDGIDMLRAE LLRIAGWQAG AEGVYLARER HLIALRAAQE HLAQAANHAE
QRAQSLDLFA EELRLAQEQL NAITGEFTSD DLLGVIFSRF CIGK
|
|---|
| |