Gene Bcen2424_2791 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagBcen2424_2791 
Symbol 
ID4449531 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameBurkholderia cenocepacia HI2424 
KingdomBacteria 
Replicon accessionNC_008542 
Strand
Start bp3087596 
End bp3089092 
Gene Length1497 bp 
Protein Length498 aa 
Translation table11 
GC content65% 
IMG OID639694858 
ProductRNA polymerase factor sigma-54 
Protein accessionYP_836434 
Protein GI116690811 
COG category[K] Transcription 
COG ID[COG1508] DNA-directed RNA polymerase specialized sigma subunit, sigma54 homolog 
TIGRFAM ID[TIGR02395] RNA polymerase sigma-54 factor 


Plasmid Coverage information

Num covering plasmid clones16 
Plasmid unclonability p-value0.148981 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGAAAGCCA GCCTTCAACT CCGCCTGTCG CAACATCTTG CGCTGACGCC TCAGCTGCAG 
CAGTCGATCC GGCTCCTGCA GTTGTCGACG CTCGAATTGC AGCAGGAAGT CGCGATGGCC
GTCGCGCAGA ACCCGCTGCT CGAGAACGAC GACGAATGGA TCGCCAGCCC GCTGCGCGTC
GCGGCGGACG GATCGCTGAT CGCGCAGACG CCGCCCGCAC AGAACACCGA GCCCACCGCG
ACCAACGGCA GCAGCACGTC CAGCGAGCGC GACGAGCCGG CCGGCGCCGA CGAATACGAC
GGCTACGGGT CCGGTGACGG CAACGACGGC CCGCAGTGGA ATCTCGACGA ATACGGCCGC
TCGAGCGGCG CGTCCGACGA CGACGACCTG CCGCCGCTGC AGGTGCAGGA AGCCGCGACG
TCGCTGCGCG ATCATCTCTC GGCGCAGTTG CGCGTCACCC AGGCCGGCCC GCGCGATCGC
GCGCTCGTGA TGTTCCTGAT CGAATCGCTC GACGACGATG GCTACCTGAC CGCCACGCTC
GACGAAGTAC TCGCCGACCT GCCGCCCGAA CTGGAAATCG ACGGCGACGA ACTGAATGCG
GCGCTCGCGC TGCTGCACAG CTTCGACCCG GCCGGCGTCG GCGCGCGCTC GGCCTCCGAA
TGCCTGAAGC TGCAGCTGCT GCGGCTCGAT CCGTCCCCCA CGCGCACGCT CGCGCTCGAG
ATCGTGTCGC AGCATCTCGA ACTGCTCGCC GCACGCGACT TCACACGGTT GCGCAAGCAC
CTGAAGGCGA GCGACGACGC GCTGCGCGAC GCGCACGCGC TGATCCGCTC GCTGGAGCCG
TTCCCCGGCG CCGCCTACGG CAAGGCCGAG GCCGACTACG TCGTGCCCGA CATCATCGTG
AAGAAGGCCG GCCAGGGATG GCTCGCGGAG CTCAATCCGG AGGTCGTGCC GCGCCTGCGG
ATCAACAACC TGTACGCGAA CATCCTGCGC AACAGCCGCG GCGATCCGTC GGCCGGATCG
TTGAAGCAGC AGCTGCAGGA AGCTCGCTGG TTGATCAAGA ACATCCAGCA GCGTTTCGAC
ACGATCCTGC GTGTCGCGCA GGCTATTGTC GAGCGTCAGA AGAATTTCTT TGCGCACGGT
GAAATTGCCA TGCGCCCCTT GGTTTTGCGG GAAATAGCTG ATACGCTGGG CCTACACGAG
TCGACTGTCA GCCGTGTGAC AACCGGGAAG TACATGCTGA CCCCGTTCGG GACGCTTGAA
TTTAAGTACT TCTTCGGATC TCACGTCTCG ACCGACACCG GTGGCGCCGC CTCGTCGACC
GCCATCCGAG CCCTCATCAA GCAACTGATA GGAGCTGAAG ACCCAAAATC GCCACTTTCG
GACAGCCGCA TTGCCGAGCT GCTGGCAGAA CAGGGTTTCG TGGTCGCGCG CCGCACGGTT
GCGAAATATC GCGAAGCCCT CAAGATCCCG GCAGTGAATC TGCGCAAGTC TCTTTAA
 
Protein sequence
MKASLQLRLS QHLALTPQLQ QSIRLLQLST LELQQEVAMA VAQNPLLEND DEWIASPLRV 
AADGSLIAQT PPAQNTEPTA TNGSSTSSER DEPAGADEYD GYGSGDGNDG PQWNLDEYGR
SSGASDDDDL PPLQVQEAAT SLRDHLSAQL RVTQAGPRDR ALVMFLIESL DDDGYLTATL
DEVLADLPPE LEIDGDELNA ALALLHSFDP AGVGARSASE CLKLQLLRLD PSPTRTLALE
IVSQHLELLA ARDFTRLRKH LKASDDALRD AHALIRSLEP FPGAAYGKAE ADYVVPDIIV
KKAGQGWLAE LNPEVVPRLR INNLYANILR NSRGDPSAGS LKQQLQEARW LIKNIQQRFD
TILRVAQAIV ERQKNFFAHG EIAMRPLVLR EIADTLGLHE STVSRVTTGK YMLTPFGTLE
FKYFFGSHVS TDTGGAASST AIRALIKQLI GAEDPKSPLS DSRIAELLAE QGFVVARRTV
AKYREALKIP AVNLRKSL