| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bcen2424_2439 |
|---|
| Symbol | |
|---|
| ID | 4448987 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Burkholderia cenocepacia HI2424 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008542 |
|---|
| Strand | - |
|---|
| Start bp | 2712291 |
|---|
| End bp | 2714105 |
|---|
| Gene Length | 1815 bp |
|---|
| Protein Length | 604 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 68% |
|---|
| IMG OID | 639694504 |
|---|
| Product | surface antigen (D15) |
|---|
| Protein accession | YP_836082 |
|---|
| Protein GI | 116690459 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG0729] Outer membrane protein |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 24 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | TTGGCGGGGC AGTCGAACCA GCAAGCACAC ACGGCGCATC ACGCGGGCCC GCGCGCGGCC
CGCGATCGCG CCGGCGCCGC GGCCCGCGTC GCGCGGGCGG CCCTCGCGGG TTGCCTGGCC
GCGTGTTTCG CGCTGCCGGC CCATGCGAAA TACGACGTCG ACATCGACGC GCCGCGCTCG
ATCCGCAAGC TCCTGAAGAC CCATCTCGAT ATTGCCCGCT TCGCGAAGCG TGACGACATC
AGCGACGACC AGTTCGACTT CCTCGTGACC GCCACGCCGC AGCAGGTGCG CGATTTGACC
GCGACGGCCG GCTATTTCTC GCCGGTCGTG CGTACCGACG TGCGCACCCG CGACGGCAAG
CGCGACGTGC ACATCGCGGT CGATCCGGGC AAGCAGACCG TCGTGTCGAC GGTCGACCTG
ACGTTCAAGG GGCCGGTCGA GACCGAGGAC CCGAAGCAGG AAACCGCGAC CCGTTTCGCG
TTCTCGATGA AGCCGGGCGA TCCGTTCACG CAATCCGACT GGGACGACGC GAAGGGCGCG
GCGCTCCGGC AACTGCAGTC GCGCCGCTAT CTCGGCGCGA AGATCGTGTC GTCCGAGGCG
CGCATCGATC CGCGCACGCA GCGTGCGACG CTCGCGGTCG CGTTCGACAG CGGCCCGACG
TTCACGATCG GCAAGGTTGA TGTCGACGGC GTGCGCCGTT ATCCGGAAAA GATCGTCACG
AACGTCAATC CGCTGTCGGA AGGCGAGATC TACGACGTGC AGCGGATCGC CGAATTGCAG
CGCCAGTTGC AGAACACGCC GTACTACGCG AGCGTCGCGA TCGACGTCGG CGACGATACG
TCGAAGCCCG AGCGCACGCC CGTGCACGTG AAGGTCAGCG AGTTTCCGTA CAACAACATC
CGCGGCGGCG TCGGCTTCGC CACCGATACC GGGCCGCACG TGCAGGGTTC CTATACGTAT
CTCGACACGT TCGGCGCCGC GTGGCCGCTG ACCGTGTCGG GCCGGCTCGA CCAGATCCAG
CAGTACGGGC AGGTCCAGCT GTCGATGCCG CCGGGCGAGA AGGGCTGGAC CAACAGCGTG
CTCGCGTCGT ACACGAACAC CAACGTGTCG GACACGCGCA TCTACAGCGC GCGGGTCGGC
GTGCAGCGCA CGCGCACCGG CCAGTTCATC GACTATGCGT ATTCGCTGAT GTACTACCAG
GATCGGCTCG ACCAGAACGG CGCGGGGCCG ACCACGAGCC GCGCGCTGGT GCCGCAGTGG
GCGTGGACCC GCCGCAACGT CGACGATCCG CTGTTCCCGC GCTCGGGCAA CCTGATTCAT
GCGGAGGCCG GCTTCGCGGT CAAGGGCGTG CTGGCCGACG AGAGCTTCAT TCGCGGCTAC
GCGCGCGGCC AGCAGTATTT GCCGATCGGC AAGCGCGACC TGTTCGTGTT CCGCGCGGAA
CTCGGCGGCG TGTTTACGAG CGGCAGCTCG ACCGGCGTGC CGGCGTCGCT GCTGTTCCGC
GCCGGCGGCT CGAACTCGGT GCGCGGCTAC GGTTACCAGA GCATCGGCAA CAGCGTCGAC
GGCTCCGTTT TGCCGACCAA GTACCTGATG ACGGGGACGG CCGAATACCA GCACTGGTTC
AACCGCGACT GGGGCGCCGC GACGTTCTTC GACATCGGCA CCGCGACCGA TGCATGGGGC
GAGCGCGTGT TTTACCCGGG CGTGGGCGTC GGTGCACGCT GGCGCAGCCC GGTCGGCCCG
ATCAACGTCG ACGTCGCGTA CGGCTTGCGC AACCACAGCG TGCGCCCGTA CCTGACGCTC
GGCATCGCTT TCTGA
|
|---|
| Protein sequence | MAGQSNQQAH TAHHAGPRAA RDRAGAAARV ARAALAGCLA ACFALPAHAK YDVDIDAPRS
IRKLLKTHLD IARFAKRDDI SDDQFDFLVT ATPQQVRDLT ATAGYFSPVV RTDVRTRDGK
RDVHIAVDPG KQTVVSTVDL TFKGPVETED PKQETATRFA FSMKPGDPFT QSDWDDAKGA
ALRQLQSRRY LGAKIVSSEA RIDPRTQRAT LAVAFDSGPT FTIGKVDVDG VRRYPEKIVT
NVNPLSEGEI YDVQRIAELQ RQLQNTPYYA SVAIDVGDDT SKPERTPVHV KVSEFPYNNI
RGGVGFATDT GPHVQGSYTY LDTFGAAWPL TVSGRLDQIQ QYGQVQLSMP PGEKGWTNSV
LASYTNTNVS DTRIYSARVG VQRTRTGQFI DYAYSLMYYQ DRLDQNGAGP TTSRALVPQW
AWTRRNVDDP LFPRSGNLIH AEAGFAVKGV LADESFIRGY ARGQQYLPIG KRDLFVFRAE
LGGVFTSGSS TGVPASLLFR AGGSNSVRGY GYQSIGNSVD GSVLPTKYLM TGTAEYQHWF
NRDWGAATFF DIGTATDAWG ERVFYPGVGV GARWRSPVGP INVDVAYGLR NHSVRPYLTL
GIAF
|
|---|
| |