| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bcen2424_1857 |
|---|
| Symbol | |
|---|
| ID | 4447938 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Burkholderia cenocepacia HI2424 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008542 |
|---|
| Strand | + |
|---|
| Start bp | 2062278 |
|---|
| End bp | 2063954 |
|---|
| Gene Length | 1677 bp |
|---|
| Protein Length | 558 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 68% |
|---|
| IMG OID | 639693901 |
|---|
| Product | glycosyl transferase family protein |
|---|
| Protein accession | YP_835501 |
|---|
| Protein GI | 116689878 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG1807] 4-amino-4-deoxy-L-arabinose transferase and related glycosyltransferases of PMT family |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 20 |
|---|
| Plasmid unclonability p-value | 0.894443 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAACGATA CGCCGTCGAG GCTACCGCTC AATCGCATCA CGCTCGTCCT CCTGCTCGTC
GCGCTCGCGA TCGTCTGGTT CGCGCCACTC GGGCTGCGCC ACCTGATCCC GAGCGACGAA
GGCCGCTACG CGGAAATGGC GCGCGAGATG TTCGTCACCG GCGACTGGAT CACGCCGCGC
TACAACGGTT ACAAGTACTT CGAGAAGCCG CCGCTGCAGA CCTGGCTGAA CGCGCTGACG
TTCGCGTGGT TCGGTATCGG CGAATGGCAG GCGCGCCTCT ACACGGCCGT CGCGAGCTTC
GCCGGCGTGC TGCTCGTCGG CTACACCGGC GCGCGCCTGT TCAACCCGCT GTCGGGCTTC
CTCGCGGCCG TCGTGCTCGC CAGCGCGCCG TACTGGAACC TGATGGGCCA CTTCAACGCG
CTCGACATGG GGCTCGCGTT CTGGATGGCG CTGTCGCTCT GCTCGCTGCT GCTCGCGCAG
CGGCCCGGGC TGCGCCCGGC GGCGGTACGC GGCTGGATGT GGGCGTGCTG GGCCGCGATG
GCGTTCGCGG TGCTGTCCAA GGGCCTCGTC GGGCTGATCC TGCCCGGCGC CGTGCTCGTG
CTGTATACGC TGATCGCGCG CGACTGGGCG CTGTGGAAGC GCCTGTATCT CGTCAGCGGC
CTCGTGATCT TCTTCGCGAT CGTCACGCCG TGGTTCGTAC TGGTCCAGCA GCGCAACCCC
GAGTTCTTCA ACTTCTTCTT CGTCGTCCAG CAGTTCCGCC GGTACCTGAC CCCGGAACAG
AACCGCCCGG GCCCGCTGTA CTACTTCGTG CCCGTGCTGC TGGTCGGCTT CCTGCCGTGG
CTGTCGGTCG CGTGGCAGAG CATCCGCCAT GCGCTGCGCA TGCCGCGCCA GCCGAACGGC
TTCTCGCCGA TGCTCGTGCT GCTGATCTGG AGCGCGTTCA TCTTCCTGTT TTTCAGCGCG
TCGCATTCGA AGCTGATCTC GTACGTGCTG CCGGTCGCGC CGGCGCTCGC GCTGATCATC
GGCGCTTACC TGCCGCTGAT GACGGCCGAG CGCTTCCGCC GCCACCTGCT CGGCTACCTC
GTGTTCTTCG TCGCCGCGGC GTTCGGGATC ATCTTCCTCG CGTACCAGGG CGACGCCCGC
ACGCCGAACG CGTTGTACCG GGCGTTCCAG ATGTGGCTGT ACGCCGGCCT CGCGGTCTCG
GCCGCGCTGA CGCTCGCGGC CGCCTGGCTG AACCGCCGCG CGGGCGTGGC CGCCGCGCTC
GCGGCGTTCG GCGCCGCGTG GCTCGCGTTC GGCACGATCG GCGGTACCGG ACACGACGAG
TTCGGCCGCT ACAGCTCGGG CGCGCTGCTC GCACCGGCCG TGCGCGCCGA GCTGGCGAAG
CTGCCGCCCG ATACGCCGTT CTACTCGATC GAAATGCTCG ATCACACGTT CCCGTTCTAC
ATGGGCCACA CGACGATCAT GGTCCAGCGC CAGGACGAGC TCGCGTTCGG GATCTCGGTC
GAGCCGAACA AGTGGGTCCC GACCGTCGGC GAATGGATCA CGCGCTGGAA GCAGGACACC
CATGCGCTCG CGATCATGCC GCCCGGCCAG TACGACGCGC TGGTCAAGGA AGGCGTGCCG
ATGCGCGTGA TCGCGCGCGA CAACCGCCGC GTGATCGTCG AGAAACCGCA ATCGTAA
|
|---|
| Protein sequence | MNDTPSRLPL NRITLVLLLV ALAIVWFAPL GLRHLIPSDE GRYAEMAREM FVTGDWITPR
YNGYKYFEKP PLQTWLNALT FAWFGIGEWQ ARLYTAVASF AGVLLVGYTG ARLFNPLSGF
LAAVVLASAP YWNLMGHFNA LDMGLAFWMA LSLCSLLLAQ RPGLRPAAVR GWMWACWAAM
AFAVLSKGLV GLILPGAVLV LYTLIARDWA LWKRLYLVSG LVIFFAIVTP WFVLVQQRNP
EFFNFFFVVQ QFRRYLTPEQ NRPGPLYYFV PVLLVGFLPW LSVAWQSIRH ALRMPRQPNG
FSPMLVLLIW SAFIFLFFSA SHSKLISYVL PVAPALALII GAYLPLMTAE RFRRHLLGYL
VFFVAAAFGI IFLAYQGDAR TPNALYRAFQ MWLYAGLAVS AALTLAAAWL NRRAGVAAAL
AAFGAAWLAF GTIGGTGHDE FGRYSSGALL APAVRAELAK LPPDTPFYSI EMLDHTFPFY
MGHTTIMVQR QDELAFGISV EPNKWVPTVG EWITRWKQDT HALAIMPPGQ YDALVKEGVP
MRVIARDNRR VIVEKPQS
|
|---|
| |