| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bcen2424_1812 |
|---|
| Symbol | ispG |
|---|
| ID | 4450956 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Burkholderia cenocepacia HI2424 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008542 |
|---|
| Strand | - |
|---|
| Start bp | 2013652 |
|---|
| End bp | 2014968 |
|---|
| Gene Length | 1317 bp |
|---|
| Protein Length | 438 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 67% |
|---|
| IMG OID | 639693856 |
|---|
| Product | 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase |
|---|
| Protein accession | YP_835456 |
|---|
| Protein GI | 116689833 |
|---|
| COG category | [I] Lipid transport and metabolism |
|---|
| COG ID | [COG0821] Enzyme involved in the deoxyxylulose pathway of isoprenoid biosynthesis |
|---|
| TIGRFAM ID | [TIGR00612] 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 32 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGATCTAT CGATGCAATC CGAAGCTCAA TCCCCACGCA GCAGTCAGAT TTGTTCAACC
GAGCCGGTGT TCGGCGGGCA TCAGCCGCGC CGCGTATCGC ATGCGGTGGA TGTCCGCTGG
GGCGGGCAAC TCGTGACGAT CGGCGGCGAC GCGCCGGTGC GCGTGCAGTC GATGACGAAT
ACCGACACGG CCGATGCGAT CGGCACGGCG ATCCAGATCA AGGAACTCGC GAATGCGGGC
TCCGAGCTGG TGCGCATCAC GGTCAACACG CCCGAAGCCG CGGTCGCCGT GCCGGCGATC
CGCGAGCAGC TCGACCGGAT GGGCGTGACC GTGCCGCTCG TCGGCGATTT CCACTACAAC
GGCCACCTGC TGCTGCGCGA CTATCCGGGC TGCGCCGAGT CGCTGTCGAA GTACCGGATC
AACCCCGGTA ACGTCGGTCA GGGTGCGAAG CGCGACACGC AGTTCGCGCA GATGATCGAG
GCCGCGGCGA AGTACGACAA GCCGGTGCGG ATCGGCGTGA ACTGGGGCAG CCTCGACCAG
GACCTGCTCG CACGCATGAT GGACGAGAAC GGCGCGCGCG CGCAGCCGTG GGACGCGCAG
AGCGTGATGT ACGAGGCGCT GATCCAGTCG GCCATCGGCT CGGCCGAACG CGCGGTCGAG
CTCGGCCTCG GCCGTGACCG CATCGTGTTG TCGTGCAAGG TCAGCGGCGT GCAGGACCTG
ATCGCCGTGT ACCGCGAACT CGGCCGCCGC TGCGGCTTCG CGCTGCACCT CGGGCTGACC
GAGGCCGGCA TGGGTTCGAA GGGCATCGTC GCGTCGACGG CGGCGCTCGG CGTGTTGCTG
CAGGAAGGGA TCGGCGACAC GATCCGCATC TCGCTGACGC CGGAGCCGGG CGCGTCGCGC
ACCGGCGAGG TGATCGTCGG CCAGGAAATC CTGCAGACGA TGGGCCTGCG CTCGTTCGCG
CCGATGGTGA TCGCGTGCCC GGGCTGCGGC CGCACGACGA GCACGCTGTT CCAGGAGCTC
GCGATGCAGA TCCAGACCTA CCTGCGCGAG CAGATGCCGG TCTGGCGCAA GGAATATCCG
GGCGTCGAGA AGATGAACGT CGCGGTGATG GGCTGCATCG TCAATGGCCC GGGCGAATCG
AAGCACGCGA ACATCGGCAT CAGCCTGCCG GGTTCGGGCG AGAACCCGGC CGCACCCGTC
TTCATCGACG GCGAGAAGGT CAAGACGCTG CGCGGCGAGC GGATCGCCGA GGAATTCCAG
CAGATCGTCA GCGACTACGT CGCACGCAAT TACGGCCGCA CCGAGGCCCT GAACTAA
|
|---|
| Protein sequence | MDLSMQSEAQ SPRSSQICST EPVFGGHQPR RVSHAVDVRW GGQLVTIGGD APVRVQSMTN
TDTADAIGTA IQIKELANAG SELVRITVNT PEAAVAVPAI REQLDRMGVT VPLVGDFHYN
GHLLLRDYPG CAESLSKYRI NPGNVGQGAK RDTQFAQMIE AAAKYDKPVR IGVNWGSLDQ
DLLARMMDEN GARAQPWDAQ SVMYEALIQS AIGSAERAVE LGLGRDRIVL SCKVSGVQDL
IAVYRELGRR CGFALHLGLT EAGMGSKGIV ASTAALGVLL QEGIGDTIRI SLTPEPGASR
TGEVIVGQEI LQTMGLRSFA PMVIACPGCG RTTSTLFQEL AMQIQTYLRE QMPVWRKEYP
GVEKMNVAVM GCIVNGPGES KHANIGISLP GSGENPAAPV FIDGEKVKTL RGERIAEEFQ
QIVSDYVARN YGRTEALN
|
|---|
| |