Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Bcen2424_1706 |
Symbol | |
ID | 4449234 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Burkholderia cenocepacia HI2424 |
Kingdom | Bacteria |
Replicon accession | NC_008542 |
Strand | - |
Start bp | 1894955 |
End bp | 1898134 |
Gene Length | 3180 bp |
Protein Length | 1059 aa |
Translation table | 11 |
GC content | 68% |
IMG OID | 639693751 |
Product | hydrophobe/amphiphile efflux-1 (HAE1) family protein |
Protein accession | YP_835351 |
Protein GI | 116689728 |
COG category | [V] Defense mechanisms |
COG ID | [COG0841] Cation/multidrug efflux pump |
TIGRFAM ID | [TIGR00915] The (Largely Gram-negative Bacterial) Hydrophobe/Amphiphile Efflux-1 (HAE1) Family |
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Plasmid Coverage information |
Num covering plasmid clones | 17 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGCCGATGC CATCGTTCTT CATCGATCGT CCCGTCTTTG CGTGGATCGT TGCGCTCGCA ATCGTCGTCG CGGGCGTGCT CGCCATTCCG CAGCTTCCGA TCGCGCAATA TCCGCGGCTT GCGCCGCCGC GGGTCGTGAT CACGGCCGCC TATCCGGGCG CGTCGACCGA GACGGTCGAC GGCGACGTCG GCAGCATCAT CGAGGAAAGC CTCGACGGCG CCGACGGGCT TCTGTATTAC GCGACGAGCA GCGACGGTCA CGGCAATCTC GAGATCGACG TCACGTTTTC GCCCGGCACC GATCCGGACA TCGCGCTCGT CGACGTGAAC AACCGGCTGA AGCAGGTCGA GCCGCGGTTG CCGCAGCAGG TCGTCCAGCA GGGGATCAGC GTATTCAAGG CAGCGAACAC GTTCCTGATG CTCGTCACGC TGACGTCGAC CGACGGCACG CGCGATTCCG CGCAACTCGG CGATTACCTG AACCGCTACG TGCTGCGCGA ACTCAAGCGT GCGCCGGGCG TCGGCGCGGC CGAGCTGTGG GACGCCGGCG AGGCGCTGCG GGTCTGGCTC GATCCGAACA AATTGCGTGA ATACGACCTC GGCGCCGACG ACGTGATCGC GGCGATCGGC GTGCAGAACG CGACGGTGAC GGCCGGTGCG ATCGGCGATG CGCCGTTCGA GCGCGGCCAG CAGCTCACCG CGACGATCGT CGTCAAGGGA CAGCTAACGT CGCCGGAGGA GTTCGGCCGG ATCGTGCTGA AGTCGAAGCA GGACGGTTCG GTGGTGCGCG TCGCCGACGT CGCGCGTGTC GAAATCGGCC GCGACGACTA TTCGTTCTAT TCGCGGCTGA ACGGCCGCCC GGCGGCAACC GTCGGCATCC AGCTTGGCCC GCGCGGCAAC GCGCTCGAAA CGTCGAACGC GATCCGTGCG CGGCTTGCCG AACTGTCGAG GGTATTGCCG CCGGGCGTGG CGATGGAGAT TCCGTTCGAT GGCGCCCATT TCGTGACGAT CGCGATCCGG GAGGTCGTGC TGACGCTCGT CGAGGCGGTC GTACTGGTGT TTTGCGTGAT GTGGCTGTTC CTGCGCGATC TACGTTACAC GCTGGTGCCG ACCGTCGTGA TTCCCGTCAC GCTGATGGGT GCGTTCGTCG CGATGTGGGC GTTCGGACTG TCGATCAACG TGTTCACGAT GTTCGGTCTC GTGCTGGCGA TCGGCATCCT TGTCGACGAT GCGATCGTCG TCGTCGAGAG CGTGCACCGG GTGATGGAGG AGGGCGTGTC GCCGCGCGAC GCCACGCGCC GCGCAATGAA GCGGATCGGC GGTGCGATCG TCGGGGTGAC CGCGGTGCTG ACCGCCGTAT TCGTGCCGAT GGCGTTTTTT CCGGGCGCCG TCGGCGGCAT CTACCGGCAG TTCGCGGTGG CGATGATCGC ATCGATGCTG GTGTCGTCGT TCATGGCGCT GTCGCTTACG CCCGCGCTGT GCGCGAACCT GCTGAAGCCC GTCGCGCGAC ACGACGGCGG AATCGGCCAC GCGCGGCGAC GTGGCATCGG CACGCATCTG GCCGACTGCT TCGGTGCGGC CTTCGCGCGC GTCGAATCCG GTTATCGCCG TCTCGCCGTG TTCGCCGTGG GCCGCACCGG CATGGTCGTG GTGGTCTACG CGGCGCTCGT GATCGCATGC GGGCTGCTGT ACTGGATGAT GCCGGGCGGC TTCCTGCCGA CCGAGGACCA GGGGCAACTG CAGGTGATGA TCCAGTTGCC GGCGGGCGCC ACGCAGGCGC GCACGCTCGC GGTCGTCGAG CGCGTCGAGG CGATCCTGCG CGCGGAGCCG GCGATCGCGA ACGTGACGAG CGTGATCGGC TGGAGTTTCG CGGGCAGCGG GCAGAACGTC GGGATGGCGT TCGTGGAGCT GAAGGACTGG GCGCGGCGCG ACGTCGACGC GATGGCGTTG CGCGACCGGC TCAACGGGCG TTTCGGCACG ATCCTCGACG GCGACGTCGA GGCGTCGCTG CCGCCGTCGG TGCGCGGCAT CGGGCATTCC GACGGATTCA CGTTCCGGCT CGAGGATCGC GGCGGCGTCG GGCTCGACGC GTTGAAGGCG GCTCGCGAGC AGTTGTCCGG ACGAGCGAAA GCGGATCCGT TGCTCGCCGC CGTGCATTTC GAAGACCTGC CGGACGCGCC GCGCATCGAA CTCGATGTCG ATCGTGCGAA GGCGTATGCG CTCGGCGTGC CGTTCGAGAG AATCGCGGGC CTTCTGGGCG GCACGTTCGG CTCGAACTAC ATCAACGATT TTCCGGCATC GGGCCGGATG CGGCGGGTGA TCATCGAGGC CGACCCGGCC GCGCGCACGA CCGATGCGCA ACTGATGGCG CTGACGGTGC CGAACCGCAC CGGCGACATG GTTCCGTTGT CGGCCATCGC CGCGCCGCAC TGGACGGTCG GCCCGGTGAT GCTGAATCGC TACAACGGCT ATCCGTCGCT CGACATCAGC GGCCGCGCGG CGACCGGCAC GAGTTCGGGC GCGGCGATGG CGGAGATGGA GCGGCTCGCC GGCGCACTGC CGGTCGGGAT CGGCTTCGAC TGGGTCGATG CGGCGCGCGA GGAGCAGGTT GCCGCGCGGC AAACGCCGCT GCTCGTCGGG CTGTCCGTGC TCGCGGTTTT CATGGCGCTT GCCGCGCTGT ACGAAAGCTG GACGGTCCCG CTGTCCGTGC TGACGATCGT GCCGCTCGGC ATGATCGGCG CGATCGCGGC GGCGCTCGCG CGCGGGTTGC CGAACGACGT GTATTTCAAG GTCGGGATGA TCACGGTGGT CGGGCTGGCG GCGAAGAATG CGATCCTGAT CGTGCAGTAC GCGCGCGATC TGGCCGGGAG CGGCGTGCCG CTGCGGCAGG CGGTGATCGA CGCGGCCGCC GCGCGATTCC GGCCGATCAT GATGACGTCG ATGGCGTTCC TGCTGGGCGT CGTGCCGCTC GTGCTGGCGA CCGGCGCGGG TGCGGAAAGC CGGCGATCGA TCGGCACGGG CGCGTTCGGG GGCGTACTCG CTGCGACGAT GTTCGGGCTC GTGTTCGCGC CGGTGGCGTT TCGGGTGGTG GTATCCATAG GCCGGCGCGG GCGGCATGCG GTGGTGACGA AGCGCGACGC GCAGCGCGTG GAAGCGGCTG AAAATCAGGA GATCGATTGA
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Protein sequence | MPMPSFFIDR PVFAWIVALA IVVAGVLAIP QLPIAQYPRL APPRVVITAA YPGASTETVD GDVGSIIEES LDGADGLLYY ATSSDGHGNL EIDVTFSPGT DPDIALVDVN NRLKQVEPRL PQQVVQQGIS VFKAANTFLM LVTLTSTDGT RDSAQLGDYL NRYVLRELKR APGVGAAELW DAGEALRVWL DPNKLREYDL GADDVIAAIG VQNATVTAGA IGDAPFERGQ QLTATIVVKG QLTSPEEFGR IVLKSKQDGS VVRVADVARV EIGRDDYSFY SRLNGRPAAT VGIQLGPRGN ALETSNAIRA RLAELSRVLP PGVAMEIPFD GAHFVTIAIR EVVLTLVEAV VLVFCVMWLF LRDLRYTLVP TVVIPVTLMG AFVAMWAFGL SINVFTMFGL VLAIGILVDD AIVVVESVHR VMEEGVSPRD ATRRAMKRIG GAIVGVTAVL TAVFVPMAFF PGAVGGIYRQ FAVAMIASML VSSFMALSLT PALCANLLKP VARHDGGIGH ARRRGIGTHL ADCFGAAFAR VESGYRRLAV FAVGRTGMVV VVYAALVIAC GLLYWMMPGG FLPTEDQGQL QVMIQLPAGA TQARTLAVVE RVEAILRAEP AIANVTSVIG WSFAGSGQNV GMAFVELKDW ARRDVDAMAL RDRLNGRFGT ILDGDVEASL PPSVRGIGHS DGFTFRLEDR GGVGLDALKA AREQLSGRAK ADPLLAAVHF EDLPDAPRIE LDVDRAKAYA LGVPFERIAG LLGGTFGSNY INDFPASGRM RRVIIEADPA ARTTDAQLMA LTVPNRTGDM VPLSAIAAPH WTVGPVMLNR YNGYPSLDIS GRAATGTSSG AAMAEMERLA GALPVGIGFD WVDAAREEQV AARQTPLLVG LSVLAVFMAL AALYESWTVP LSVLTIVPLG MIGAIAAALA RGLPNDVYFK VGMITVVGLA AKNAILIVQY ARDLAGSGVP LRQAVIDAAA ARFRPIMMTS MAFLLGVVPL VLATGAGAES RRSIGTGAFG GVLAATMFGL VFAPVAFRVV VSIGRRGRHA VVTKRDAQRV EAAENQEID
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