Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Bcen2424_1627 |
Symbol | |
ID | 4448828 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Burkholderia cenocepacia HI2424 |
Kingdom | Bacteria |
Replicon accession | NC_008542 |
Strand | + |
Start bp | 1794034 |
End bp | 1796520 |
Gene Length | 2487 bp |
Protein Length | 828 aa |
Translation table | 11 |
GC content | 68% |
IMG OID | 639693672 |
Product | fimbrial biogenesis outer membrane usher protein |
Protein accession | YP_835272 |
Protein GI | 116689649 |
COG category | [N] Cell motility [U] Intracellular trafficking, secretion, and vesicular transport |
COG ID | [COG3188] P pilus assembly protein, porin PapC |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 20 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | GTGCGAATCA GACATTCCTT CCTTTGCGTC TCCGTGCTGG TCGTCGGCAG CCAGAGCCAG GCGACGGAAT TCAATTCGTC GTTCCTCGAC ATCGACGGAA CGAGCAACGT CGACCTGTCG CAGTTCTCGC AGCCGGACTT CACGTTGCCC GGCGAGTACA TGCTCGACGT GCAGGTCAAC GACCTGTTCT ACGGGCTGCA AGCGATCGAG TTCATCGCGC TCGACGCATC GGGCGCGGGC AAGCCGTGCC TGCGGCCGGA ACTCGTCGCG CAGTTCGGGC TGAAGCCATC GCTCGCGAAG GACCTGCCGC GCTTCCAGGG CGGGCGGTGC GTCGATCTCG GCGCGATCGA GGGCGCGACC GTGCGCTACC TGAAAAGCGA CGGGCGGCTC AAGATCACGA TTCCGCAGGC CGCGCTCGAG TTCACCGATT CGACCTACCT GCCGCCGTCG CGCTGGTCCG AAGGCATTCC GGGTGCGATG CTCGACTATC GCGTGATCGC GAACACGAAC CGCAACTTCG GGGCGGGCGG CGGGCAGACG AATTCGATCC AGGCCTACGG GACGATCGGC GCGAACTGGG ATGCGTGGCG TTTTCGCGGC GACTACCAGG CGCAATCGAA CGTGGGCAAC ACGGCGTACG CGGACCGCAC GTTCCGCTTC AGCCGGCTTT ATGCGTTTCG CGCGCTGCCG TCGATCCAGT CGACGGTGAC GTTCGGCGAC GACTACCTGA CCTCCGACAT CTTCGACACG TTCGCGCTGA CGGGCGCGTC GATCCGCAGC GACGACCGCA TGCTGCCGCC GTCGCTGCGC GGCTATGCGC CGCTGATCTC GGGTGTCGCG CGCACCAACG CGACCGTGAC CGTGTCGCAG GCCGGCCGCG TGCTGTACGT GACGCGCGTG TCGCCGGGCG CGTTCGCGCT GCAGAACATC AACACGAGCG TGCAGGGCAC GCTCGACGTG GCGGTCGAGG AAGAAGACGG CAGCGTGCAG CGCTTCCAGG TGACGACGGC CGCCGTGCCG TTCCTCGCCC GCACCGGCCA GTTGCGCTAC AAGGCGGCGG TCGGCAAGCC GCGCCTGTTC GGTGGCGGCG GCATCACGCC GTTCTTCGGC TTCGGCGAAA TCGCGTACGG CCTGCCGTTC GACATCACCG CCTATGGCGG CTTCATCGCC GCGTCGGGCT ACACGTCGGT CGCGCTCGGC GTCGGTCGCG ATTTCGGCGC GTTCGGCGCA GTGTCGGCCG ATGTCACGCA CGCGCGGGCG AAGCTGTGGT GGAGCGGCGC GACGCGCAAC GGCAACTCGT ACCGCATCAA CTATTCGAAG CACTTCGACG GGCTCGATGC CGACGTGCGC TTCTTCGGCT ACCGCTTCTC CGAGCGCGAA TATACGAACT TCGCGCAGTT CTCCGGCGAC CCGACGTCAT ACGGCCTCGC CAACAGCAAG CAGCGCTATT CGGCGACGAT GTCGAAGCGC TTCGGCGACA CGTCGACCTA TTTCTCGTAC GACCAGACGA CCTACTGGGC GCGTTCGTCC GAGCAGCGGG TCGGCCTGAC GCTCACGCGT GCGTTCTCGA TCGGCACGCT GCGCAACCTG AACGTCAGCG TGTCGGCATT CCGCACGCAG AGCGCGGGCG CGAGCGGTAA CCAGTTCTCG GTCACCGCGA CGCTGCCGAT CGGCGGCCGC CACACCGTCA CGTCGAACCT GACGACGGGC AACGGCAGCA CCAGCGCGAA CGCCGGCTAC ATCTACGACG ATTCGGCCGG CCGCACCTAT CAGGTCAACG CGGGCGCGAC CGACGGCCGC GCGTCGGCGA ACGCGAGCTT CCGCCAGCGC ACGTCGGCGT ACCAGCTCAA CGCACAGGCG TCGACGCTCG CCAATGCGTA TGCGGCCGCG TCGCTCGAAG TCGACGGCTC GTTCGTCGCG ACGCAGTACG GCGTGTCCGC GCACGCGAAT GGCAATGCGG GCGATACGCG GCTGCTGGTG TCGACCGACG GCGTGCCCGA CGTGCCGCTG TCCGGCACGC TCACGCACAC CGATTCGCGC GGCTACGCGG TGCTCGACGG CATCTCGCCG TACAACGTGT ACGACGCGAC CGTCAACGTC GAGAAGCTGC CGCTCGAAGT GCAGGTGACG AACCCGATCC AGCGCATGGT GCTGACCGAC GGCGCGATCG GCTTCGTGAA GTTCTCCGCC GCGCGCGGCA GCAACCTGTA CCTGACGCTG ACCGATGCGG CCGGCAAGCC GCTGCCGTTC GGCGCGTCGG TGCAGGACGC GGCGAACGGC AAGGAACTCG GCATCGTCGG CGAGGGCGGT GCGGCGTTCC TGACCCAGGT TCAGCCGAAA TCCACGCTGG CGGTGCGGGC GGGCGAACGG ACGCTCTGCA CGGTCGACGC ACTGCCGAAC CAGCTTCAAC TCGAAGGCAC GCCGATCCCG GTGACGTGCC AGCCGCCCGG CGAGTCGCAT GCAGCGGCCG CGCGGGGCGA ACGATGA
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Protein sequence | MRIRHSFLCV SVLVVGSQSQ ATEFNSSFLD IDGTSNVDLS QFSQPDFTLP GEYMLDVQVN DLFYGLQAIE FIALDASGAG KPCLRPELVA QFGLKPSLAK DLPRFQGGRC VDLGAIEGAT VRYLKSDGRL KITIPQAALE FTDSTYLPPS RWSEGIPGAM LDYRVIANTN RNFGAGGGQT NSIQAYGTIG ANWDAWRFRG DYQAQSNVGN TAYADRTFRF SRLYAFRALP SIQSTVTFGD DYLTSDIFDT FALTGASIRS DDRMLPPSLR GYAPLISGVA RTNATVTVSQ AGRVLYVTRV SPGAFALQNI NTSVQGTLDV AVEEEDGSVQ RFQVTTAAVP FLARTGQLRY KAAVGKPRLF GGGGITPFFG FGEIAYGLPF DITAYGGFIA ASGYTSVALG VGRDFGAFGA VSADVTHARA KLWWSGATRN GNSYRINYSK HFDGLDADVR FFGYRFSERE YTNFAQFSGD PTSYGLANSK QRYSATMSKR FGDTSTYFSY DQTTYWARSS EQRVGLTLTR AFSIGTLRNL NVSVSAFRTQ SAGASGNQFS VTATLPIGGR HTVTSNLTTG NGSTSANAGY IYDDSAGRTY QVNAGATDGR ASANASFRQR TSAYQLNAQA STLANAYAAA SLEVDGSFVA TQYGVSAHAN GNAGDTRLLV STDGVPDVPL SGTLTHTDSR GYAVLDGISP YNVYDATVNV EKLPLEVQVT NPIQRMVLTD GAIGFVKFSA ARGSNLYLTL TDAAGKPLPF GASVQDAANG KELGIVGEGG AAFLTQVQPK STLAVRAGER TLCTVDALPN QLQLEGTPIP VTCQPPGESH AAAARGER
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