| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bcen2424_0769 |
|---|
| Symbol | |
|---|
| ID | 4450798 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Burkholderia cenocepacia HI2424 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008542 |
|---|
| Strand | - |
|---|
| Start bp | 861593 |
|---|
| End bp | 863530 |
|---|
| Gene Length | 1938 bp |
|---|
| Protein Length | 645 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 61% |
|---|
| IMG OID | 639692792 |
|---|
| Product | capsule polysaccharide biosynthesis |
|---|
| Protein accession | YP_834415 |
|---|
| Protein GI | 116688792 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG3563] Capsule polysaccharide export protein |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 35 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | TTGCGCATCA TGAACGTATC GACACGCCGA CGGCGGCTTG CCTACTCGCC CCTTCACTGG
GCAATTGCGC CAGCACGAAC GACAGTTTGG CCAGGGCCGC TCGCCGCTCG CCCATCCACT
TCCGCAGCGT TGCTTTCTTG GTTTGAAGCA CCCGCCGGGA TCCCGCCATC GAACGCGCTG
ATTAGTTCCG TCGACGGAAT GCTCCGCTCG GAAACGCGAC TCGGTGAATC GGAACGGATC
GCAGCCCTGA TGTCTCGCGT ACTCGAGAGC GACGCGCTAC ACCTGCGCAT GCGAATCGCT
CCGTTGCCAA GCGCGCTGGC TGTCGCAGAC AGAAAACACA TCGTCATCAT CGACGAACGG
ACCCGCTCCG AAATTGACGC GGGCGTACCT GCGCGCGAAA GGTTTCGTCA GTTCTCCGCA
ATGCTCCAAC ATCTCGCAGA ATTTCGGTCA GACGCGCAGA TCTGGATTCT GCGTAGTAAC
GATCCTGGAA GAGGCGCGTG GCTGTCTAAA CGAGTACGAT TGCCCCATAA CGTGCAGCGC
CTCTCCGGTG CGAGCTCACT TCGCGAAATC CTTCGACACG TCACCGAAAT GTATACGGTT
GCCGCGTCTG AAGGCATGGC TGCATTGCTC ACCGGCATAC CCGTCTATGT GTTCGGCGCC
CCCTATTACG CAGGCTGGGG ACTCACAACC GATGCGCAGC CACTGACCGA CCGTCACGCG
CGCCCCACAG TCGCCGCCCT GTTCGAAGCG GTCTTTTGCC GCTCGGCCCG CTACCTCGAC
CTCGAGACAT ATACAGTTGG CACAATCGAC GCCCTTCTCG ACGCCGTCGA AGTACAGCAT
GCGGTTGCGC ACCGTTTCGC CGATCTGCAG CGCGTTGCCG GCATCCAATT TCAATGGTGG
AAGCGCCCTT TTGCAACGCC GTATTTGAAT GCTGGTGGAG GTCGCCTGCG CTGGAGTACA
CATCCTGTCA AGGTTCGCAC CGACGAACAT GCGGCTTTAT GGGGCGCACG CGACGCGACA
GCACTGCCTT CCACTGCACA GCGGCTGAGG ATAGAGGACG GCTTCATCCA TTCCTCTGGC
CTGGGCTCCG ACATGTCTGC ACCACGCAGT CAGGTCATCG ATCGGCGCGG ACTCTATTTC
GACGCCAGCG CGCCCAGCGA TCTATCGACA CTGCTCAACA CAATAGATTT CCCCCCAGCG
GAGCTAGCAC GCGCCGCGGC ACTACGAAGC CGGATCGTCG CGGCCGGCAT CACCAAATAC
AACCTCGGGC GCAAAGCGCC TACCTGGCTG GCGCCCGTCA ATCAAAAGGT CGTGCTTGTT
GTTGGTCAAG TCGCCGATGA CGCATCAATC CGGCTCGGCA CGCGCGGCAT CGACAACCTC
GACGCACTGC TGCGCCGCGT ACGCGAGCGT CTCCCCGACG CATTCATCGT GTATAAGCCC
CATCCGGATG TGCTGTCCGG AAACCGGAAC GGCCTCATCA ACGCAGCCCA GTTGGCAAAC
ATCGTCGATT CCGAGTCGGA CATGATCTCG CTGATCGAGG CTGTCGATGA AGTACACACA
CTCTCGTCCC TCGCGGGATT CGACGCGTTG CTGCGCGGCA AGAACGTCAG CACCTACGGG
CTACCGTTTT ATGCTGGCTG GGGCCTGACC GACGACGACC TCGCGCCACT TCCGTGGCGA
GAGCGCACGT TGTCGCTCGA CATGCTGGTA GCGGGCACTC TATTGCGCTA TCCGCTTTAC
TGGGACTGGC AACTCCAACT CTTCACAACC CCGGAAGCAG TCGTTGGTCA GTTGTCGGAG
GCCGCTGCAC GTCCGTTGAA AACCGTCGCT CAAGACCGCT TGCGCCCATA CGTGAAAGCA
TTGCGCTGGA CGCGCAATGT CGTGCGCCAT CTCGTTTGGC GTTACCGGCA GAACTCGGCA
GACCGCGATC AGGCGTAG
|
|---|
| Protein sequence | MRIMNVSTRR RRLAYSPLHW AIAPARTTVW PGPLAARPST SAALLSWFEA PAGIPPSNAL
ISSVDGMLRS ETRLGESERI AALMSRVLES DALHLRMRIA PLPSALAVAD RKHIVIIDER
TRSEIDAGVP ARERFRQFSA MLQHLAEFRS DAQIWILRSN DPGRGAWLSK RVRLPHNVQR
LSGASSLREI LRHVTEMYTV AASEGMAALL TGIPVYVFGA PYYAGWGLTT DAQPLTDRHA
RPTVAALFEA VFCRSARYLD LETYTVGTID ALLDAVEVQH AVAHRFADLQ RVAGIQFQWW
KRPFATPYLN AGGGRLRWST HPVKVRTDEH AALWGARDAT ALPSTAQRLR IEDGFIHSSG
LGSDMSAPRS QVIDRRGLYF DASAPSDLST LLNTIDFPPA ELARAAALRS RIVAAGITKY
NLGRKAPTWL APVNQKVVLV VGQVADDASI RLGTRGIDNL DALLRRVRER LPDAFIVYKP
HPDVLSGNRN GLINAAQLAN IVDSESDMIS LIEAVDEVHT LSSLAGFDAL LRGKNVSTYG
LPFYAGWGLT DDDLAPLPWR ERTLSLDMLV AGTLLRYPLY WDWQLQLFTT PEAVVGQLSE
AAARPLKTVA QDRLRPYVKA LRWTRNVVRH LVWRYRQNSA DRDQA
|
|---|
| |