| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bcen2424_0720 |
|---|
| Symbol | secD |
|---|
| ID | 4448385 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Burkholderia cenocepacia HI2424 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008542 |
|---|
| Strand | - |
|---|
| Start bp | 800400 |
|---|
| End bp | 802421 |
|---|
| Gene Length | 2022 bp |
|---|
| Protein Length | 673 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 68% |
|---|
| IMG OID | 639692743 |
|---|
| Product | preprotein translocase subunit SecD |
|---|
| Protein accession | YP_834366 |
|---|
| Protein GI | 116688743 |
|---|
| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG0342] Preprotein translocase subunit SecD |
|---|
| TIGRFAM ID | [TIGR00916] protein-export membrane protein, SecD/SecF family
[TIGR01129] protein-export membrane protein SecD |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 24 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAATCGTT ATCCACTCTG GAAATATGTC GTGATGGTCG TGGCGCTCGC CATCGGCCTT
CTGTACACAT TGCCCAACTT CTTCGGCGAA GCGCCGGCGG TGCAGGTGTC GAGCGGCAAG
GCCACGGTCA AGCTCGACTC GACCACGCTG ACCCAGGTCG AATCGGCACT CGCGTCCGCG
CAGATCAAGC CGGACGACGT CACCTTCGAG AACACGGCGA CCAGCGCGAA CATCCGCGTG
CGCCTGAAGG ACACCGATAC GCAGCTGCGC GTCAAGGACC TGCTGCAGAA GTCGCTGAAT
GCCGACCCGA ACGATCCGCA GTACGTCGTC GCACTGAACC TGCAGAGCGC GTCGCCGCGC
TGGCTGACCG CCCTGCACGC GCTGCCGATG TATCTCGGCC TCGACCTGCG CGGCGGCGTG
CACTTCCTGC TCCAGGTCGA CATGACGGGC GCGCTCACGA AGAAGCTCGA CTCCGACGCG
TCCGACGCGC GCTCGCTGCT GCGCGACAAG AACATCCGCG ACGGCGGCGT GAGCCGCGTC
GAGCAGTCCG TGGTCGTCAA CTTCAGCGAT GCGCAGACGG CGGAAGACGC CCGCAAGGTG
CTCGCCGCGT CGATCACCGA GCTGCAATGG GCGACCCAGC CCGGCGGCGG CGGCACGCAA
GTCGTCGGCA CCTTCACGCC GGCCGTGCAG AAGTCGGTCG AGGACGCCGC GCTCAAGCAG
AACCTGACGA CGCTCCACAA CCGCGTGAAC GAGCTCGGCG TGTCCGAGCC GATCCTGCAG
CAGCAAGGCA GCGACCGCAT CGTCGTCGAA CTGCCGGGCG TGCAGGACAC CGCGAAGGCG
AAGGACATCA TCGGCCGCAC CGCGACCCTC GAGGCGCGCC TGGCCGACCC GATCAACACG
CACCCGAACC CGAACGACCC CGTGCCGCCG GGCGAGGAGC TGTTCACGCA AGGCAACCAG
GCGCCCGTGC TGCTGAAGAA GGACGTGATC TTCACCGGCG ACCGCATCAT CGACGCATCG
GCCGGCTTCG ACGAACACCA GCGTCCGTCG GTCAACATCC GCCTCGACTC GGCGGGCGGC
CGCGCGGTGC GCACGGTGTC GCGCGACAAC ATCGGCAAGC CGATGGCGAT GGTGCTGTTC
GAGAAGGGCA AGGGCGAAGT GCTGACGGTC GCGACGATCC AGTCCGAGCT CGGCGACCGC
TTCCAGATCA CGGGCCAGCC GACGCCGCAG GCCGCGGCCG ACCTCGCGCT GCTGCTGCGC
GCCGGCTCGC TCGCGGCGCC GATGGACATC ATCGAGGAAC GCACGATCGG CCCGAGCCTC
GGCGCCGACA ACATCAAGAT GGGCGTGCAC TCGGTGATCT GGGGCTTCTG CGCGATCGCC
GTGTTCATGA TCGCGTACTA CATGCTGTTC GGCGTGGTGT CGGTGATCGG GCTGTCGGTG
AACCTGCTGC TGCTCGTCGC CGTGCTGTCG CTGATGCAGG CGACGCTGAC GCTGCCCGGT
ATCGCGGCCA TCGCGCTCGC GCTCGGTATG GCGATCGACT CGAACGTGCT GATCAACGAG
CGCGTGCGCG AAGAACTGCG CGCCGGCCAG CCGCCGCAGC TCGCGATCCA GGCCGGCTAC
GCGCATGCGT GGGCGACGAT TCTCGACTCG AACGTCACGA CGCTGATCGC CGGTCTCGCG
CTGCTTGCGT TCGGTTCGGG CCCGGTTCGC GCGTTCGCGA TCGTGCACTG CCTCGGCATC
CTGACGTCGA TGTTCTCCGC GGTGTTCTTC TCGCGCGGGC TCGTCAACCT CTGGTACGGC
GGCCGCAAGA AGCTGAAGTC GCTCGCGATC GGCCAGGTGT GGAAGCCGGA AGGCGCCGCT
GCCGCCGCGT CGTTCACCGA CGAGGACGAA TCGACCGACA CCGCGCGCGC CGCGAAGCTC
GCCGCCCCGG CGAAGGGCAA CGCGCCGCGC GCCGGCAAGC CGCAGCTGCG CAACCGCGCG
CAGCAAGGCG TGTCGCCGAA GAAACCGGGC TCGACCCAAT AA
|
|---|
| Protein sequence | MNRYPLWKYV VMVVALAIGL LYTLPNFFGE APAVQVSSGK ATVKLDSTTL TQVESALASA
QIKPDDVTFE NTATSANIRV RLKDTDTQLR VKDLLQKSLN ADPNDPQYVV ALNLQSASPR
WLTALHALPM YLGLDLRGGV HFLLQVDMTG ALTKKLDSDA SDARSLLRDK NIRDGGVSRV
EQSVVVNFSD AQTAEDARKV LAASITELQW ATQPGGGGTQ VVGTFTPAVQ KSVEDAALKQ
NLTTLHNRVN ELGVSEPILQ QQGSDRIVVE LPGVQDTAKA KDIIGRTATL EARLADPINT
HPNPNDPVPP GEELFTQGNQ APVLLKKDVI FTGDRIIDAS AGFDEHQRPS VNIRLDSAGG
RAVRTVSRDN IGKPMAMVLF EKGKGEVLTV ATIQSELGDR FQITGQPTPQ AAADLALLLR
AGSLAAPMDI IEERTIGPSL GADNIKMGVH SVIWGFCAIA VFMIAYYMLF GVVSVIGLSV
NLLLLVAVLS LMQATLTLPG IAAIALALGM AIDSNVLINE RVREELRAGQ PPQLAIQAGY
AHAWATILDS NVTTLIAGLA LLAFGSGPVR AFAIVHCLGI LTSMFSAVFF SRGLVNLWYG
GRKKLKSLAI GQVWKPEGAA AAASFTDEDE STDTARAAKL AAPAKGNAPR AGKPQLRNRA
QQGVSPKKPG STQ
|
|---|
| |