| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bcen2424_0485 |
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| Symbol | |
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| ID | 4450051 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Burkholderia cenocepacia HI2424 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008542 |
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| Strand | - |
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| Start bp | 540817 |
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| End bp | 544761 |
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| Gene Length | 3945 bp |
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| Protein Length | 1314 aa |
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| Translation table | 11 |
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| GC content | 68% |
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| IMG OID | 639692503 |
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| Product | ImcF domain-containing protein |
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| Protein accession | YP_834132 |
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| Protein GI | 116688509 |
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| COG category | [S] Function unknown |
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| COG ID | [COG3523] Uncharacterized protein conserved in bacteria |
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| TIGRFAM ID | [TIGR03348] type VI secretion protein IcmF |
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Plasmid Coverage information |
| Num covering plasmid clones | 9 |
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| Plasmid unclonability p-value | 0.752194 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGCAACGCA TCCTCAACGT GCTGACTCAT CCGCGTACGC TCTCGATCGT CGGGATCGTC
GCGCTAGCGG CCATTCTGTT CATCGTCGCC GACATGCTGC AGCTGCCGCT CCTGTGGGCG
GCGCTCGCGT TCGCGGCGGT CCTCGCGCTG TGGCTCGTCG TCGCGCTATG GCGCCGCTGG
CGCGTGAAGC GCGCGAACCA GCAGCTCGGC CAGGTGCTGG AAGAGCAGGC GGAAACCGGC
AAGATCGCCG CACCGGCCGC CGCCGCGCTC GCGCCGGACG CGAAGACGGC CGACCTCGAC
GTGCTGCGCA CGCGCCTGTC GGATGCGGTG AAGACGATCA AGACGTCGAA GATCGGCCAG
GTGTCGGGCG GCTCCGCGCT GTACGAACTG CCGTGGTACA TCGTGATCGG CAACCCAGCC
GCGGGCAAGA GCAGCGCCGT GCTCAATTCC GGCCTGCAGT TCCCATTCGC GGACAAGAAC
AGCGCCGTGA TCCACGGCAT CGGCGGCACG CGTAACTGCG ACTGGTTCTT CACGACCGAA
GGGATCCTGC TCGATACGGC CGGCCGCTAT TCGGTGCACG AGGAAGACCG TAGCGAGTGG
CTCGGCTTCC TCGGGCTGCT CAAGCGCTAC CGTCCGAAGG CGCCGATCAA CGGCATCATC
GTCACGGCCA GCATCGCCGA ACTCACCGGC AATCGCCCCG AATTCGCGAT CAACCTCGCG
AAGAACCTCC GTCAGCGCGT TCAGGAGCTG ACCGAAAAGC TGGAAGTGTT CGCGCCGGTC
TACGTGATGT TCACGAAGGC CGACCTGATC ACCGGCTTCA CCGAATTCTT CAGCAGCAGC
GACAAGCACG AGTACGACCG CGTGTGGGGC GCCACCCTGC CCTACGAACC CGACGACAAG
CGTGACGTCG TCGCGCAGTT CGACACGCAC TTCGAGGAAC TCTACGAAGG GCTGAAGGAA
ATCAGCGTCG CGCAGCTGTC GCTGTCGCGC GGCAACCAGC TGTCGCCGGG CCAGTTGAGC
TTTCCGCTCG AATTCTCGAC GATCAAGCCG TCGCTGCGCG CGTTCCTCGC GACGCTGTTC
GAGAACAACC CGTTCCAGTA CAAGCCGATC TTCCGCGGCT TCTACTTCAC CAGCGCACTG
CAGGAAGGCG AAACCAACAG CGCGGCCGCG CAGCGCATCG CGCACCGCTT CGGCCTCGAC
GGCAGCGCGC TGCCGAAACC GCACAGCGCG TTCTCGAAGA ACGGCTTCTT CCTGCGCGAC
CTGTTCTCGA AGGTGATCTT CGCGGACCGC CAGACGGTGC GCCAGTTCGC GAGCCCGACC
AAGACGCGGC TGCGCTACGC GACCTTCTTC GGCTTCGTCG CGGCGCTCGC GCTCGCGCTG
GGCGGCTGGA CCTGGTCGAC CATCGGCAAC CAGCAGCTCG TCGCGAACGT GCAGGCCGAC
CTCGACAACG TCACGCGCCT GCAGCAGGGC CGCAACGACC TGCAGTCGCG CCTGCAGGCG
ATGGACATCA TCGAGGACCG GATCGAGCAG CTCGAACAGT TCCGCCGCGA CAAGCCGCTG
TCGGTGTCGC TCGGCCTGTA CCAGGGCGAC CGTCTCGAGC AGCACCTGCT GACCGAGTAC
TACAACGGCG TGCGCCAGAT CCTGCTGGCC CCGGTGTCGC AGAACCTCGC GTCGTTCATG
AAGGACGTGA ACGCGCACCC CGAGCAGCTC GTGCCGATGA CGCGCCCGCC TGAATCGGGC
GCCGTGCAGG GCGGCACGCT GCCGGTCTCG ACGAACGCGG CAGGAGCCGC GCCGCAAGCG
GGCGCCATGC TGGCCGCGTC CGGCACCGCG CCGGCCGCCG CCCCGCAACA GGCGGCCGCG
CCGCAGGGCG GCCTCTACAG CGACGCGTCG CCGACCAACG TGCAGGACGC GTACAACGCG
CTGAAGACCT ACCTGATGCT GTCCGACAAG CGTCACGTCG AACAGGCGCA CCTGACCGAC
CAGCTCGCCC GCTTCTGGCG CGGCTGGCTC GAGACGAATC GCGGCAACAT GCCGCGCGAC
GAGATGATCC GGAGCGCCGA GCGCATGATC TCGTTCTACC TGTCGCGCGT GAACGACGAC
GACTGGCCGA TGATCGACGC GAACCTCGCG CTCGTCGACC AGACCCGCGA GAACCTGCGC
CGCGTCGTGC GCGGCATGCC GGCCCGCCAG CGCGTCTACG AGGAAATCAA GGCCCGCGCG
TCGACCCGCT TCGCGCCGAT GACCATCGCG CGCATCGTCG GCGACGGCAA CCAGGGGCTC
GTGGCAGGCA GCTATGCGAT TCCGGGCACG TTCACGCGCG AAGCGTGGTT CGACTACGTG
CAGCCGGCGA TCCGCGATGC GGCGACCAAG GAGCTGCAGG CGAAGGACTG GGTGCTCAAC
ACGTCGACGC AGGACGACCT GACGCTCGAG GGCAGCCCCG AGCAGATCCA GAAGACGCTC
GTCGGCATGT ACAAGACCGA GTACGCGCAG CACTGGCAGA AGTTCATGCA GGGCATCGCG
GTACAGGGCT TCACCAGCTT CGGCCAGGCC GTCGACGGGA TGAACCGCCT CGGCGACCCG
CAGGATTCGC CGATCCGCAA GATCCTCGAG ACCGCGTACG ACCAGACGTC GTGGGACAAC
CCGTCGCTCG CGAACGTGAC GATCAAGAAG GCGCAGACGG GCGTCGTGAA CTGGGTCAAG
CAACTGTTCA CGCGCTCGCA GGCCGGCCAG ATGGCGGCAG CCAACATCGA CATCAACGGC
AATCCGGCCG AGGTGCCGAT GGGTCCGATC GGCCAGGAAT TCGTCGGACT CGCGCGGATC
GTCGCGACGC ATGACGGCAC GTCGATGCTC AAGGGCTACA TGGAGTCGCT GTCGAAGGTC
CGCACCCGCT TCAACGTGAT CAAGAACCAG GGCGACCCGG GGCCGGGCGC GCGCCAGCTG
ATGCAGCAGA CGCTCGACGG CAACGGTTCG GAACTCGCCG ATTCGCTGAA GCTCGTCGAC
GAGCAGATGT TGACGGGCCT GACCGATTCG CAACGCAAGT CGCTGCGCCC GCTGCTGGTG
CGGCCGCTGA TGCAGGCGTT CGCGGTCGTG ATCCAGCCGG CCAGCGCCGA AGTCAACAAG
GTGTGGAACG CGCAGGTCTA CCAGCCGTTC CAGAGCTCGC TCGCGACCAA GTACCCGTTC
GCGGCGAACG CGAAGGTCGA GGCCGGCGCC GGCGAGATCG CGCAGGTGTT CGGTCCGGAC
GGCTCGATCG CGAAGTTCGT CGGCACGACG CTCGGGCCGC TCGCGGTGCG CCGCGGCGAC
ACGCTCGCCG CCCGCACGTG GGGCGACATG GGCATCGGGC TCACGCCGGA CTTCACGAAC
GGCTTCGCAC GCTGGGTCGC GCCGCTCGCG GGCGGCGCCG CCGGCAGCGC GGCCGCGTCG
GCCGAACCGC AGACCGTGTT CCAGATCCTG CCGCAACCGA GCACGGGCAC GACGGAATAC
ACGATCGCGA TCGACGGCCA GCAGCTGCGC TACCGCAACA CGCCGCCGCA GTGGACCAAC
TTCGTGTGGC CAAACCCGCA GGGCGCGCCG GGCGCGACGC TGTCCGCGAC GACCTTCGAC
GGCCGCACGG TGCAGCTCGT CAACGAGCCG GGCCGCTACG GTCTCGAGAA GCTGATCAAC
TCGGCGCAGC GCAAGCGCCG TCCGGACGGC ACCTTCGATC TGACGTGGGC ACAAGGCAGC
GTGAACGTGT CGGTGACGAT GCGCATCATC AGCACGTCGC AACCGTCGGC CGGTGGCGGC
GACCAGCCGC AGCAGCAGAG CCTGCGCGGC CTGCAGCTGC CGTCGTCGGT CGCCGACGCG
AGCGCGGGCG CCGCGCAGAA CGCGACGCAA GCCGGCACCG GCACGCCGGG CGCCGCGCCG
GCCGTCGCGG CCGCCAACGC AACGAATGCA CAGAGGGCGC AATGA
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| Protein sequence | MQRILNVLTH PRTLSIVGIV ALAAILFIVA DMLQLPLLWA ALAFAAVLAL WLVVALWRRW
RVKRANQQLG QVLEEQAETG KIAAPAAAAL APDAKTADLD VLRTRLSDAV KTIKTSKIGQ
VSGGSALYEL PWYIVIGNPA AGKSSAVLNS GLQFPFADKN SAVIHGIGGT RNCDWFFTTE
GILLDTAGRY SVHEEDRSEW LGFLGLLKRY RPKAPINGII VTASIAELTG NRPEFAINLA
KNLRQRVQEL TEKLEVFAPV YVMFTKADLI TGFTEFFSSS DKHEYDRVWG ATLPYEPDDK
RDVVAQFDTH FEELYEGLKE ISVAQLSLSR GNQLSPGQLS FPLEFSTIKP SLRAFLATLF
ENNPFQYKPI FRGFYFTSAL QEGETNSAAA QRIAHRFGLD GSALPKPHSA FSKNGFFLRD
LFSKVIFADR QTVRQFASPT KTRLRYATFF GFVAALALAL GGWTWSTIGN QQLVANVQAD
LDNVTRLQQG RNDLQSRLQA MDIIEDRIEQ LEQFRRDKPL SVSLGLYQGD RLEQHLLTEY
YNGVRQILLA PVSQNLASFM KDVNAHPEQL VPMTRPPESG AVQGGTLPVS TNAAGAAPQA
GAMLAASGTA PAAAPQQAAA PQGGLYSDAS PTNVQDAYNA LKTYLMLSDK RHVEQAHLTD
QLARFWRGWL ETNRGNMPRD EMIRSAERMI SFYLSRVNDD DWPMIDANLA LVDQTRENLR
RVVRGMPARQ RVYEEIKARA STRFAPMTIA RIVGDGNQGL VAGSYAIPGT FTREAWFDYV
QPAIRDAATK ELQAKDWVLN TSTQDDLTLE GSPEQIQKTL VGMYKTEYAQ HWQKFMQGIA
VQGFTSFGQA VDGMNRLGDP QDSPIRKILE TAYDQTSWDN PSLANVTIKK AQTGVVNWVK
QLFTRSQAGQ MAAANIDING NPAEVPMGPI GQEFVGLARI VATHDGTSML KGYMESLSKV
RTRFNVIKNQ GDPGPGARQL MQQTLDGNGS ELADSLKLVD EQMLTGLTDS QRKSLRPLLV
RPLMQAFAVV IQPASAEVNK VWNAQVYQPF QSSLATKYPF AANAKVEAGA GEIAQVFGPD
GSIAKFVGTT LGPLAVRRGD TLAARTWGDM GIGLTPDFTN GFARWVAPLA GGAAGSAAAS
AEPQTVFQIL PQPSTGTTEY TIAIDGQQLR YRNTPPQWTN FVWPNPQGAP GATLSATTFD
GRTVQLVNEP GRYGLEKLIN SAQRKRRPDG TFDLTWAQGS VNVSVTMRII STSQPSAGGG
DQPQQQSLRG LQLPSSVADA SAGAAQNATQ AGTGTPGAAP AVAAANATNA QRAQ
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