| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bcen2424_0468 |
|---|
| Symbol | |
|---|
| ID | 4450034 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Burkholderia cenocepacia HI2424 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008542 |
|---|
| Strand | + |
|---|
| Start bp | 519211 |
|---|
| End bp | 520701 |
|---|
| Gene Length | 1491 bp |
|---|
| Protein Length | 496 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 63% |
|---|
| IMG OID | 639692486 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_834115 |
|---|
| Protein GI | 116688492 |
|---|
| COG category | [S] Function unknown |
|---|
| COG ID | [COG3517] Uncharacterized protein conserved in bacteria |
|---|
| TIGRFAM ID | [TIGR03355] type VI secretion protein, EvpB/VC_A0108 family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 5 |
|---|
| Plasmid unclonability p-value | 0.0000282714 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | decreased coverage |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAACCAGC AAACGGCTGC GGCCCAAGCG AGCGGCGCGG AATACGCCGC CGGGACTTCG
CTGCTCGACG ACATCGTCGA GAAGAGCAAG GTCGCGAAAT CCGATTCCGA GCATGCGCGT
GCGAAGGACC TGATCGGCGA ACTCGTGCAT CAGGTGCTCG ACGGCACGGT GATCGTGTCG
GACAACCTGT CGGCCACGAT CGACGCGCGC GTCGCGGAGC TCGACCGCCT GATTTCCACG
CAGCTTTCCG CCGTGATGCA CGCGCCGGAA TTCCAGCGCC TCGAAAGCAC GTGGCGCGGG
ATGGATTATC TGGTCAAGGA AAGCAACACG GGCCAGACGA TCAAGATCAA GGCGCTGCAC
GCGCCGAAGC GCGATCTCGT GCGCGATTTC AAGGGCGCGA GCGAGTTCGA CCAGAGCGCG
CTGTTCAAGA AGGTCTACGA AGAGGAATTC GGCACGTTCG GCGGCTCGCC GTTCGGTGCG
CTGATCGGCG ATTACGAGAT CTCGCGCCAG CCGGAAGACA TGTACTTCAT CGAGCAGATG
TCGCATGTCG CGGCGGCCGC GCATGCGCCG TTCATCGCGT CGGCGTCGCC GGAGCTGCTC
GGCCTCGAGT CGTTCTCCGA CCTCGGCAAG CCGCGCGACC TCGGCAAGGT GTTCGACACC
GTCGAATACG CGAAGTGGAA GTCGTTCCGA GACGCCGAGG ATTCGCGCTA CGTCGGCCTG
ACGCTGCCGC GCTTTCTCGG CCGCCTGCCG TTCAATCCGA AGGACGGCCA GACCGCGGAG
AACTTCAACT TCGTCGAGGA CGTCGACGGC ACCGATCACG ACAAGTACCT GTGGTGCAAC
GCGGCATGGG CCTTCGCGGC CCGCCTGACG GCCGCGTTCG ACGACTTCGG CTGGTGCGCG
GCGATCCGCG GCGTCGAAGG CGGCGGCCTC GTCGAGGATC TGCCGACCCA CACGTTCAAG
ACCGACGACG GTGAAGTCGC GCTGAAGTGC CCGACCGAAA TCGCGATCAC CGATCGCCGC
GAGAAGGAGC TGAGCGATCT CGGCTTCATC CCGCTCGTCC ATTGCAAGAA CTCAGATTAC
GCCGCGTTCT TCGCTGCGCA GTCGGTGCAG AAGCCCAAGA AATACAGCAC CGACAGCGCG
AACGCGAATG CCGTCCTGTC CGCCCAGCTT CAGTACATCT TCTCGGTATC GCGCGTCGCG
CACTACCTGA AGGCGATGAT GCGGGACAAG ATCGGCAGCT TCGCATCGGC GCAGAACGTG
GAGACTTTCC TCAACCGGTG GATTTCGCAG TACGTCCTGC TCGACGACAA CGCCTCGCAG
GAACAGAAAG CGCAATTTCC GCTGCGCGAG GCATCCATAC AAGTGTCGGA GATTCCGGGC
AAGCCGGGCT CGTATCGTTC GGTCGCGTTC CTGCGCCCGC ACTTTCAGCT CGACGAACTC
TCGATTTCTC TGCGACTTGT CGCTGATCTG CCCAAACCGG CAAATTCATA A
|
|---|
| Protein sequence | MNQQTAAAQA SGAEYAAGTS LLDDIVEKSK VAKSDSEHAR AKDLIGELVH QVLDGTVIVS
DNLSATIDAR VAELDRLIST QLSAVMHAPE FQRLESTWRG MDYLVKESNT GQTIKIKALH
APKRDLVRDF KGASEFDQSA LFKKVYEEEF GTFGGSPFGA LIGDYEISRQ PEDMYFIEQM
SHVAAAAHAP FIASASPELL GLESFSDLGK PRDLGKVFDT VEYAKWKSFR DAEDSRYVGL
TLPRFLGRLP FNPKDGQTAE NFNFVEDVDG TDHDKYLWCN AAWAFAARLT AAFDDFGWCA
AIRGVEGGGL VEDLPTHTFK TDDGEVALKC PTEIAITDRR EKELSDLGFI PLVHCKNSDY
AAFFAAQSVQ KPKKYSTDSA NANAVLSAQL QYIFSVSRVA HYLKAMMRDK IGSFASAQNV
ETFLNRWISQ YVLLDDNASQ EQKAQFPLRE ASIQVSEIPG KPGSYRSVAF LRPHFQLDEL
SISLRLVADL PKPANS
|
|---|
| |