| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bcen2424_0460 |
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| Symbol | |
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| ID | 4449661 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Burkholderia cenocepacia HI2424 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008542 |
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| Strand | + |
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| Start bp | 508605 |
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| End bp | 513260 |
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| Gene Length | 4656 bp |
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| Protein Length | 1551 aa |
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| Translation table | 11 |
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| GC content | 61% |
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| IMG OID | 639692478 |
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| Product | YD repeat-containing protein |
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| Protein accession | YP_834107 |
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| Protein GI | 116688484 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG3209] Rhs family protein |
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| TIGRFAM ID | [TIGR01643] YD repeat (two copies) |
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Plasmid Coverage information |
| Num covering plasmid clones | 6 |
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| Plasmid unclonability p-value | 0.61036 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGCACAAC AACTTCCACC CGGTGCAGAG AAGGAACAGG CTGTTTCCTG GCTCAGCGAT
ATTTCACCGA AAGACGTGGC GGCGGGGGGC GACCGTTTCA ATAAGTGGTT GCTCAAGATC
AGCGGCAATC ACATTTCGTT CGAGGATCTC AAAACCGTCG CGAGCGCGGT GCCGATCATC
GGCAACCTGA TGGCGTTCTA CGATGCCGTG TGCGACATCG TGACGATCGT CGAGAAGCGT
CATGCCGATC TGCTCGATTA CCTTGGACTC GCGATCAACC TGATCGGGGT CATTCCGGTT
CCGCCGCCGC TGGCGTCGTT CCGACTGTCG GCGCGGCCGC TGTTGGCGCT TGTGCGCAAT
CAGTTGCTGG TGTCTCGCGG CAATCTCGGG GCGGCGATCA TTGGCGTGCT CGTTGCACAC
GTCAACGCCG CGGCCGCGAC GGAAATCGAG AACTTCCTGA AGACGTTGCA GGAAGTCCTT
GTCGATCTGC TGAATGACTG CGCGGCCAAG GCGCAGGAAT TGATGGTCGG TATTGCCAGC
GGACTCGAGC TTGCCCTCAA AGGGCAGATT TTCGACAGTA GTGCGAACGT GCGACGTACG
CAGCAGATCG CGCGGAAGAT GGGCGAGCGA TCCTGGTACA ACCCGAAGCT CTTGGTCGAT
GCGTTCGAGT ACGGTTACGA AGGTTCGATC GCGTTGGGCA AGGAAGCCGG CAACGCGACG
GTCGGGACCG CCGCGAAGCT GGCGCCGGAT TCGTGGCTCC AACCGTTTCG CGATATCGTC
GCCTTCCTGA AGACTGAGGC GCCGAAAGTT GCGAAGGCCA TCCGTGATCT GAATGGCAGC
GAAGAAGGCA AGATGCTCTG GCTGATCGCG CAAGTGATCG AGGCCGTGGC ACGGGTGCGG
GCGGGCGGCA AGCTTCGTGA AAAGACCGCC GACGTGCCGA CCGGCGGCAA GGGAAGGGCA
CATCATGATC GCCCGCAGGA GCCGGTGGGT GCGGTCGAGC AGCATGCGCA TCCGGAGGGT
CCTGGCCAGA GCCCCTGCAA AGGTTGCGGG GTCGGCGCGT CGACCGGGTC GATCGATTTC
GCTTTCGGCG ATGAGACGTT CACGCATACG GACTTTGAAC TGCCCGGCGC ATTGCCGCTT
GTCTGGGCGC GTACTTATCG CTCACGCCTG TCCGCATACG ACACCGGAGA ACTCGGCGCG
CGATGGATTA CGCCGTACAC GACGCGCATC GATATAGAAG GCGACACATG GTTCTACCGT
GATGCCAGCG GGCGCAGCAT TGAATATCGC GCGCTCGCAG CCGGAAGCGT GCATGACGAT
CTCTCGGAAA ACCTGACGCT GTCGCGACTC GACGATACGT GGGTGACGAT TGCGTACGGC
CACGACGAGT TGCACGTGTA TGAACGGCGT GGCAACGCGT TCAGGCTGGC GATGCAGAAA
GATCGCGCGG GTAACACGAT CACGCTCGAC TACGATGCGC GCGACCACGT GGCGCGCCTG
ATTGATGCGA ACGGTAACGT GCTGTCGTTC GAGCACGACA AGCACGGCCG GATCGTACTG
ATCGAGCAGG TGCTCGAAGA CGGTAAGCGT CGCACGCTCG CGAGCTACGC CTATGACGAA
GCGGCCGATC TGATCCGCGC AACCGATCGG CACGGCAACG CGTGGAACTA CCAGTACGAC
CGACATCTCG TCACGCGCTA CACCGATCGC ACCGGCCGCG GGATGTCGCT TGAATGGGAC
GGCGCGGACG CTGACGACAA CGCGAATGCG AAATGCGTGC GCGAGTACGC GGACGACGGC
AGCCTCGATA TCCGTCTGGC GTGGCATCCG AACATTCGAT TGACCTATGT GACCGATGCG
CTCGGTCAGA CGACGCGTTA TTACTTCAAT ATCAAGGGCT ACGTTTATCG GATCGCCTAT
CCGGATGGAA GCGAAGAGTG GTTCCGGCGA GACGAGCACA ACAATCTGAC GTTGCACATT
CTGCCGGACG GCAGCGTCGA GCAGATGCGT TACGACGCGC GCGGTAACCG GACATGGCAC
GAGCGCGCTG ACGGCAGCAT TGTCGAGATG GCATACGACG ACAAGGACCA GATGATCCGG
CTCGTCGATC CGAATGGGCA TGTCTGGCAG CGCAAGTACG ATGATGCAGG CAATCTCGTC
GAGGAAATCG ATCCGCTCGA GCACTCGACG AAGTACAGCT ATAACGACAA GGGGCTGCCG
ACACAGATCA CCGATGCCAA AGGCGGATCG AAGGCGCTCG AATACAACGC CGCCGGGCAA
TTGACCGGCT ACACGGACTG CTCTGGAAAG AAGACGGCGT GGCGCTATGA CGATATCGGG
CGTGCGATCG AGACAAAGGA TGCGTCCGGG GGCGTCGTTG CTTATGCATA TGGCCCGAAC
GGCCAGTTGA CGGAGATTCG TTCGCCGGCC GGTGTCGAAC ACGTGCAGTA CGATGCTGAA
GGTCGATTGC TTGGGCGTAC GGATCAACTC AATCGGTCGA CGCGATATGG CTACGATGCC
GTTGGCCGTA TCGCGAGCCG CTCGGACGCG CTCGGGCAGA CGATCGCGTA TCGCTACGAC
CGTCTCGGGC GCTTGACCGC GCTGACCGAT GCCAACTTTG CGACGTACCA GTTCCGCTAC
GATCCGGCAG GGCGGCTGAT CGAGGAAATC GCCTTCGACG GCAAGTCGAC GCGTTATCAG
TACGATCCGG ACAGCGGCAG TCTCGTTTCG ATCGATGAAG CGGGTTGCGT GACTTCGGTC
GACGTCGATG CGAACGGCCG TCTGCTGAAG CGCATCGCGG GGGACAGCGA GGAACGGTTT
GCCTACGATC CGAGCGGCAG GTTGATCGAC GCGGTGAATC GGTACAGCCG CGTGCAGTTC
TTCTTCGATC CGGTTGGCAA TCTGGTGCGT GAACATCACG CTTACGATCT GTTCGGCGAC
CGGCGCAGCT ACGTGTGGCA TCACGAATAC GACGAACTCG GCAATCGGCG GCGTACCGTT
CGGCCGGACG GGCATGCGGT CGACTGGCTG ATGTATGGCT CGGGGCATGT GCACGGGATG
CTGCTCGATG GCGAGGAGCG CGTGCAGTTC GAGCGCGATG ACTTGCATCG CGAGACGGTG
CGTGTGCTGT CGAGCAAGGT CGGGCAGCGC ACGCACTACG ATCCGGCTGG GCGCGTGCTG
CAGCAGACGA TCCAGCGGTC GACGTCGCCC GCGCCGCTTG CCGAGCGGCG CTATCGCTAT
GACGCGGTGG GGCAGTTGTC GCGGATCGAG GACAGCCGCA AGGGCGGGAC CGATTATCGA
TACGATCCTG TCGGGCGTTT GATCGAGGCG ATCAGTCCCG TCGCGAAGGA GCGGTTCGCG
TTCGATCCGG CGAGCAACAT CATCGATCCG GTGCGGATTA CGGAGACGCC TGCATCGCGT
CCCAGCCCGG TGCGGCCGGA AAGCACGTTG CCGGTCGAGG TGCCGAAGGT GCTCGGGAAC
CTGCTGAAGG CGTACGCGGG GATGCACTTC GAGTACGACG CACGCGGGAA TCTGGTGCGC
AAGCGCACGC CTGCGGGGCA GCAGGAATAC GAGTGGGATG AATTCAATCG CTTGCTGTCC
GCGCGGGTTG CCGAGACGTC GCGGCAGAGT CAGGCTCGGT ATTTCTATGA TGCGTTCGGT
CGTCGTATTG CGAAGGAGGT GAACGGCGAG CGGACGGTGT TCGGGTGGGA TGGCGACACG
CTGGCGTACG AGAGTGATGG CGAGCGTGGC ACGCACTATC TGTACGAGCC GGGGACGTTC
GTGCCGCTGG CGCAGTATGT GGCGGAGCCA GTTGAGGGAA TCGAGACGCC GGTATGGACG
AGTACCGACC GCTATGTGCC GGAAGATGAC CCGCTGCAGA AGGTGCCGGA GCGGCGGGGC
GATGCGGCGG TGTTCTATTA CCACTGTGAT CAGATCGGCA CGCCGCAGCT TCTAACGGAC
GATGATGGTG ATGTGGTCTG GGAAGCGTCG TACAAGGCTT GGGGTGAAGC GCGGGAGGTG
ATTGCGCGGG CGTCGAAGGC GGCGGGGATT GTGGCTAAGA ATCCGTTGCG GTTTCAGGGA
CAGCAGGTTG ATGCGGAAAC GGGACTGCAC TATAACTGGC ACCGGTACTA TGATTCGGGT
ATCGGAAGGT TCGTGTCGAA AGATCCGATC GGGCTCGTTG GCGGGATCAA CGTCTATCAA
TATGCGTCGA ATCCGGTCGA ATGGATCGAT CCGTTGGGGT TGGCACCTCG CCGTCCTGCC
CATGAAGCCA GCATCCAGAG AAGAGTTAAC TGCCTCAAGT CTCAGGGGTT TCAAGAGCAC
CACATTATTA GCGACAAGAA TTCCCAGACG AAAAATCACC CTCTAATTGC GCTTGCTGGC
TTTGATCTTC AATCTCAGGC TAACAAAATC TATCTACCAG ATGACGAAAG CCTTCATCCG
ACTCGCTCGA TCCACAACGG GCGTCATCCC AACATCGTAA GCACAAACTT GTCCAGACAA
ATGAACGATG CTGTTGTGAT AGGAAAGCAG CAGGGTTGGG GGCAGAAACA GTATGACGCG
GCTCTGCGCG GAATCATCGC GCGAGAGCGG ATGGAGTTGA AAGCCGGGAA CCGGATGCTC
AACAAGAACC ATCGACCATG GGCGTGTCCA AACTAA
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| Protein sequence | MAQQLPPGAE KEQAVSWLSD ISPKDVAAGG DRFNKWLLKI SGNHISFEDL KTVASAVPII
GNLMAFYDAV CDIVTIVEKR HADLLDYLGL AINLIGVIPV PPPLASFRLS ARPLLALVRN
QLLVSRGNLG AAIIGVLVAH VNAAAATEIE NFLKTLQEVL VDLLNDCAAK AQELMVGIAS
GLELALKGQI FDSSANVRRT QQIARKMGER SWYNPKLLVD AFEYGYEGSI ALGKEAGNAT
VGTAAKLAPD SWLQPFRDIV AFLKTEAPKV AKAIRDLNGS EEGKMLWLIA QVIEAVARVR
AGGKLREKTA DVPTGGKGRA HHDRPQEPVG AVEQHAHPEG PGQSPCKGCG VGASTGSIDF
AFGDETFTHT DFELPGALPL VWARTYRSRL SAYDTGELGA RWITPYTTRI DIEGDTWFYR
DASGRSIEYR ALAAGSVHDD LSENLTLSRL DDTWVTIAYG HDELHVYERR GNAFRLAMQK
DRAGNTITLD YDARDHVARL IDANGNVLSF EHDKHGRIVL IEQVLEDGKR RTLASYAYDE
AADLIRATDR HGNAWNYQYD RHLVTRYTDR TGRGMSLEWD GADADDNANA KCVREYADDG
SLDIRLAWHP NIRLTYVTDA LGQTTRYYFN IKGYVYRIAY PDGSEEWFRR DEHNNLTLHI
LPDGSVEQMR YDARGNRTWH ERADGSIVEM AYDDKDQMIR LVDPNGHVWQ RKYDDAGNLV
EEIDPLEHST KYSYNDKGLP TQITDAKGGS KALEYNAAGQ LTGYTDCSGK KTAWRYDDIG
RAIETKDASG GVVAYAYGPN GQLTEIRSPA GVEHVQYDAE GRLLGRTDQL NRSTRYGYDA
VGRIASRSDA LGQTIAYRYD RLGRLTALTD ANFATYQFRY DPAGRLIEEI AFDGKSTRYQ
YDPDSGSLVS IDEAGCVTSV DVDANGRLLK RIAGDSEERF AYDPSGRLID AVNRYSRVQF
FFDPVGNLVR EHHAYDLFGD RRSYVWHHEY DELGNRRRTV RPDGHAVDWL MYGSGHVHGM
LLDGEERVQF ERDDLHRETV RVLSSKVGQR THYDPAGRVL QQTIQRSTSP APLAERRYRY
DAVGQLSRIE DSRKGGTDYR YDPVGRLIEA ISPVAKERFA FDPASNIIDP VRITETPASR
PSPVRPESTL PVEVPKVLGN LLKAYAGMHF EYDARGNLVR KRTPAGQQEY EWDEFNRLLS
ARVAETSRQS QARYFYDAFG RRIAKEVNGE RTVFGWDGDT LAYESDGERG THYLYEPGTF
VPLAQYVAEP VEGIETPVWT STDRYVPEDD PLQKVPERRG DAAVFYYHCD QIGTPQLLTD
DDGDVVWEAS YKAWGEAREV IARASKAAGI VAKNPLRFQG QQVDAETGLH YNWHRYYDSG
IGRFVSKDPI GLVGGINVYQ YASNPVEWID PLGLAPRRPA HEASIQRRVN CLKSQGFQEH
HIISDKNSQT KNHPLIALAG FDLQSQANKI YLPDDESLHP TRSIHNGRHP NIVSTNLSRQ
MNDAVVIGKQ QGWGQKQYDA ALRGIIARER MELKAGNRML NKNHRPWACP N
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