Gene Bcen2424_0232 details

Gene Information

• Locus tag: Bcen2424_0232
• ID: 4449174
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Burkholderia cenocepacia HI2424
• Kingdom: Bacteria
• Replicon accession: NC_008542
• Strand: +
• Start bp: 268800
• End bp: 270749
• Gene Length: 1950 bp
• Protein Length: 649 aa
• Translation table: 11
• GC content: 69%
• IMG OID: 639692240
• Product: TPR repeat-containing protein
• Protein accession: YP_833879
• Protein GI: 116688256
• COG category: [R] General function prediction only
• COG ID: [COG0457] FOG: TPR repeat
• TIGRFAM ID: [TIGR02019] bacteriochlorophyll 4-vinyl reductase

Plasmid Coverage information

• Num covering plasmid clones: 34
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGAATGTCC GCCGCTTTGC CCAGCCCTCC ATGACGACGC CAGCTTCCGA CGTTTCCGCG 
TGCGTTCGAC ACGCCGCGAC CTTGTGCCAG AACGGACAGT TTGCCGACGC ACTGTCACGC 
GTCGCGCCGC TGCTCGATGC GCCTGCGGTG GACGTCGCGG CGCTGCACGT CGCGGCCGTC 
TGTGCGCTGG GCCTGAACCG GCTGGCGGAT GCCGAGGCGT GGTGGCGGCG CGCGATCGAC 
GCGATGCCGG CGTTCGAGCC CCCATACGAC GGCCTTCACG CGCTGCTGCT GTCGCAGGAG 
CGCTTGCCCG AAGCCGAAGT GATCCTGCGC CGGCAGCTTG CCTGCGTCGC GCCGTTGCGC 
GCGTCGCACC ATCACCGGTT CGGCAAGGTG CTCGAAGCGC TCGGCCGGCT CGACGAAGCC 
GAACAGGCGT TCGGGCAGGC CCTGTCGATC GAGCCGCGGT CGCCCGACGT GCTGACCGAT 
CTCGGCAACC TGCTTCGCAT CCTCGCGCGG CCCGCGGAGG CGGAGCTCGC GTACCGGCTC 
GCGATTGCCG TTCGCGCCGA TCATGTGCTC GCGCACGCGA ATCTCGGCGC GATCCTCGTC 
GACATGCAGC GGCTGCCGGA AGCGGAGGCG GCTAGCCGGC AGACCATCGC ACTGTGTCCG 
GATCATCCGG AAGCGCATTA CAACCTCGGC GTCGCGCTGC AGAACCTCGA TCGCCTGTCC 
GAAGCGGAAG CGGCCTATCG CGACGCCATC CGCTGCCGGC CCGGCCTGCC GCAGCCACAC 
AACAATCTCG GCTGCGTCCT GCGTGCGCAG GGCCGCCACG ACGAAGCGGC CGTCGCGTTC 
ACCGACGCGC TGGCGCTCGC GCCGCGGATG GCCGAGGTGC ACTACAACCT CGGCACGACC 
TTGGCGCATG CGGGCCAACT CGACGAAGCC GAACGCGCAT ACCGTCGCGC GCTCGACCTG 
CGCGCCGACT ATGACGACGC GCGCTTCGGG CTGGCGACGC TGCTGCTCGG CCGGGGACGA 
TTCGAGGAAG GCTGGCGCCG CTACGAATCG CGCTACGAGC AGTCGACGTT CGTGCACCGC 
CGAACCCGCG AGGTACTGCG GTGCGCGCAG TGGCAAGGCG AGCCGCTAGC CGGCAAGACG 
CTGCTCGTGT GGCAGGAGGA CGGCCTCGGC GATATGCTGC AGTTCAGCCG TTATTTCGCG 
GAATTTCGCG CGAGGCGGGC GGCGCGGGTG GTGTTCGCGT GCCAGCCGGC GCTGCATCGG 
CTGATGGAGA CGGTCGACGG TGTCGACGCA GTGCTCGATC ACGAGGCGGC CACCGCACAG 
GCCGGGCAAT TCGATTACTG GACGAGCCTG TTGAGCGCGC CGATGCACGC GGGCACGACA 
CTCGACACGA TCCCGCCGCC GGTGCGGTTC GTGTCCGATC CGGCGTGCGT CGCGCACTGG 
GGCGCACGCC TCGATGCGTT GCCTGCCGGC CCGCGCGTCG GTCTTGTATG GAAAGGCAAT 
CCGAAGCATC ACAACGACGT GCACCGTTCG CTGCCGTCAC TGGCATTGCT GACGCCGCTA 
TGGAGCGTGC CGGGCGTGAA TTTCGTGAGC CTGCAGAAAG GGCAGGGCGA GGACGAAGCG 
CGCCAGCCGC CGGGCGGGCT GCCGTTGCTG CACCTGGGCT CGGAGCTCGA CGATTTCGCC 
GATACGGCCG CGATCGTCGC GCAACTCGAT CTCGTGGTGT GCGTCGACAC GTCGACCGCG 
CATCTGGCCG CATCGCTCGG CAAGCCCTGC TGGGTGCTGC TGCCGAATCA GGACGTGGAC 
TGGCGGTGGA TGCACGACCG TGAGGATTCG CCGTGGTATC CGGGCACGGT GCGGTTGTTC 
CGGCGCGGGC GCGGCGAGAG CTGGATTCAG ATGGCCGAGC GGCTGCGGGG GGTGTTTGCC 
GCGCATTTCA GGGAGTGCGT CGATGCGTAG 

 

Protein sequence

MNVRRFAQPS MTTPASDVSA CVRHAATLCQ NGQFADALSR VAPLLDAPAV DVAALHVAAV 
CALGLNRLAD AEAWWRRAID AMPAFEPPYD GLHALLLSQE RLPEAEVILR RQLACVAPLR 
ASHHHRFGKV LEALGRLDEA EQAFGQALSI EPRSPDVLTD LGNLLRILAR PAEAELAYRL 
AIAVRADHVL AHANLGAILV DMQRLPEAEA ASRQTIALCP DHPEAHYNLG VALQNLDRLS 
EAEAAYRDAI RCRPGLPQPH NNLGCVLRAQ GRHDEAAVAF TDALALAPRM AEVHYNLGTT 
LAHAGQLDEA ERAYRRALDL RADYDDARFG LATLLLGRGR FEEGWRRYES RYEQSTFVHR 
RTREVLRCAQ WQGEPLAGKT LLVWQEDGLG DMLQFSRYFA EFRARRAARV VFACQPALHR 
LMETVDGVDA VLDHEAATAQ AGQFDYWTSL LSAPMHAGTT LDTIPPPVRF VSDPACVAHW 
GARLDALPAG PRVGLVWKGN PKHHNDVHRS LPSLALLTPL WSVPGVNFVS LQKGQGEDEA 
RQPPGGLPLL HLGSELDDFA DTAAIVAQLD LVVCVDTSTA HLAASLGKPC WVLLPNQDVD 
WRWMHDREDS PWYPGTVRLF RRGRGESWIQ MAERLRGVFA AHFRECVDA