Gene STER_1513 details

Gene Information

• Locus tag: STER_1513
• Symbol: ligA
• ID: 4437865
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Streptococcus thermophilus LMD-9
• Kingdom: Bacteria
• Replicon accession: NC_008532
• Strand: -
• Start bp: 1416088
• End bp: 1418034
• Gene Length: 1947 bp
• Protein Length: 648 aa
• Translation table: 11
• GC content: 43%
• IMG OID: 639677112
• Product: NAD-dependent DNA ligase LigA
• Protein accession: YP_820862
• Protein GI: 116628243
• COG category: [L] Replication, recombination and repair
• COG ID: [COG0272] NAD-dependent DNA ligase (contains BRCT domain type II)
• TIGRFAM ID: [TIGR00575] DNA ligase, NAD-dependent

Plasmid Coverage information

• Num covering plasmid clones: 6
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGAAAGAGC TGGTTGACAA ACTTAACCAG TATGCAAAAG AGTATTATAC CGAGGATAAT 
CCATCGGTGT CAGATGCCGA GTATGATAAG CTCTATCGTG AGTTAGTAAC TTTAGAGGCT 
GAACACCCAG AACTTGTTCA GGCGGATAGC CCTACGCACC GTGTGGGTGG CCTGGTTCTT 
GATGGTTTTG AGAAATACCA ACATGAGTAT CCGCTTTATA GTTTGCAGGA TGCTTTTTCA 
CGAGAAGAGC TAGATGCCTT CGATAAGAGG ATCAAGTCCG AATTTCCTAA CGCTGACTAT 
ATGGCCGAGC TCAAAATTGA TGGCCTTTCA ATTTCTCTAA CCTATGTGGA TGGTATTCTT 
CAAGTAGGTG CAACGCGAGG TGATGGTTCT GTTGGTGAAA ATATCACTGA AAATGTTAAG 
CGAATCTCGG ATATTCCTCT GAAGTTGGAT CAACCGCTTA ATATCACCGT TCGGGGTGAG 
TGTTATTTGC CACGAGCTGA GTTTGAACGC ATCAACACCC AGCGCCAGGA GAATGGTGAG 
GCCGAATTTG CCAATCCACG TAATGCTGCA GCAGGAACTC TTCGTCAATT AGATACGAAA 
GTAGTTGCTG AGCGTCGTTT GGCCACCTTC TTTTATCAAG AAGCTGGTCC CACTGAGCGC 
CTGACACAAA ATGATGTCTT GAATGAAGTG GCAGAACTTG GCTTCTCCGT TAATCCACGC 
CGTATTGTGA CATCATCGAT GGATGAGATT TGGGACTTTA TTCAAGCTGT TGGGCAAGAT 
CGTGATCACT TGGCTTATGA TATTGATGGA GTTGTTATCA AGGTCAATAG TTTGGCCATG 
CAGGAAGAAC TTGGCTTTAC CGTTAAGGCA CCACGTTGGG CCATTGCCTA TAAATTCCCA 
GCTGAGGAAA AGGAAGCAAA ACTTCTCTCG GTTGATTGGC AGGTGGGTCG TACAGGTGTA 
GTAACGCCGA CGGCTAATTT GACCCCAGTA CAATTGGCCG GGACAACAGT TAGCCGAGCT 
ACCCTACACA ATGTAGATTA TATTACGGAG AAAGACATTC GTATTGGTGA TACCGTTATT 
GTTTATAAGG CTGGTGATAT TATCCCTGCT GTTCTTCGTG TGGTAGAAAG TAAGCGTACA 
ACACAAGAAG CGATGCCAGT TCCGAGTCAA TGTCCATCTT GTGGTAGTGG TCTCTTACAT 
TTTGAAGATG AAGTAGCCCT ACGTTGTATC AATCCATCTT GTCCTGCTCA GATTAAGGAA 
GGTCTTATTC ATTTTGCTTC TCGTGATGCC ATGAACATCT CAGGTATGGG ACCTTCAGTG 
GTTGAAAAAC TCTTTAAAGC TGAATTGGTT AAAGAGGTGG CTGATATCTA TGGTTTAAAT 
AGTCAGGATT TCCTCCAATT AGAAGGTTTC AAGGAAAAAT CAGCTGAAAA ACTATATGCA 
GCTATTCAAG CATCAAAAGA AAATTCTGCA GAGAAACTGC TCTATGGTTT GGGAATTCGC 
CATGTTGGTG CCAAAGTTAG TAAGCAATTG CTAGAATCTT TTGGAACTAT CAAGGAGTTG 
GCAAGTGCAG ATGTCCAAGC TATTGCTGCT GTAGATGGTT TGGGAGAGGT TATCGCCAAG 
TCAATCCAGC GTTATTTTGC CAAGGAGGAG GCTCAAGTTC TTCTTAAAGA ACTGGAATCC 
TATGGTGTTA ATTTATCCTA TCTTGGTCAA AAAGTAACAG ATGATGCCAT TCTATCTGGT 
AAGACTGTTG TTTTGACAGG GAAATTGGAG CATCTTAAAC GTAGTGAAGC GAAGGCAAAA 
CTAGAGGCCC TGGGTGCTAA GGTGACGGGT TCAGTCTCTA AGAAAACAGA TTTAGTGGTT 
GCTGGTAGTG ATGCCGGAAG TAAGTTGGAA AAAGCACAAA GCCTAGGAAT TGAAGTAAAA 
GATGAGGCTT GGTTGCTGGA TTTATAG 

 

Protein sequence

MKELVDKLNQ YAKEYYTEDN PSVSDAEYDK LYRELVTLEA EHPELVQADS PTHRVGGLVL 
DGFEKYQHEY PLYSLQDAFS REELDAFDKR IKSEFPNADY MAELKIDGLS ISLTYVDGIL 
QVGATRGDGS VGENITENVK RISDIPLKLD QPLNITVRGE CYLPRAEFER INTQRQENGE 
AEFANPRNAA AGTLRQLDTK VVAERRLATF FYQEAGPTER LTQNDVLNEV AELGFSVNPR 
RIVTSSMDEI WDFIQAVGQD RDHLAYDIDG VVIKVNSLAM QEELGFTVKA PRWAIAYKFP 
AEEKEAKLLS VDWQVGRTGV VTPTANLTPV QLAGTTVSRA TLHNVDYITE KDIRIGDTVI 
VYKAGDIIPA VLRVVESKRT TQEAMPVPSQ CPSCGSGLLH FEDEVALRCI NPSCPAQIKE 
GLIHFASRDA MNISGMGPSV VEKLFKAELV KEVADIYGLN SQDFLQLEGF KEKSAEKLYA 
AIQASKENSA EKLLYGLGIR HVGAKVSKQL LESFGTIKEL ASADVQAIAA VDGLGEVIAK 
SIQRYFAKEE AQVLLKELES YGVNLSYLGQ KVTDDAILSG KTVVLTGKLE HLKRSEAKAK 
LEALGAKVTG SVSKKTDLVV AGSDAGSKLE KAQSLGIEVK DEAWLLDL