| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | STER_0639 |
|---|
| Symbol | rpsA |
|---|
| ID | 4438101 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Streptococcus thermophilus LMD-9 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008532 |
|---|
| Strand | + |
|---|
| Start bp | 581371 |
|---|
| End bp | 582573 |
|---|
| Gene Length | 1203 bp |
|---|
| Protein Length | 400 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 41% |
|---|
| IMG OID | 639676345 |
|---|
| Product | 30S ribosomal protein S1 |
|---|
| Protein accession | YP_820100 |
|---|
| Protein GI | 116627481 |
|---|
| COG category | [J] Translation, ribosomal structure and biogenesis |
|---|
| COG ID | [COG0539] Ribosomal protein S1 |
|---|
| TIGRFAM ID | [TIGR00717] ribosomal protein S1 |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 5 |
|---|
| Plasmid unclonability p-value | 0.136649 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAACGAAT TTGAAGAATT GCTAAATAGT GTTAGCGAAG TTAGCACAGG TGACGTTGTA
ACAGCTGAAG TTATCTCAGT AGATAATGAT CAAGCAAATG TTGTTATCGA AGGAACAGGT
ATCGAAGGTG TTTTGACACG TCGTGAATTG ACAAATGACC GTGACGCAAA CGTTGCCGAC
CTTGTTAAAG ATGGTGAAAC ACTTGAAGTG CTTGTTCTTC GTCAAGTTGT TGGTAAAGAT
ACTGATACTG TAACTTACCT TGTATCTAAA AAACGCTTGG AGGCTCGCAA AGCTTGGGAT
AAACTTGTTG GTCGTGAAGA AGAAGTTGTT ACTGTTAAAG GAACACGTGC TGTTAAAGGT
GGACTTTCAG TTGAATTTGA AGGACTCCGT GGATTTATTC CAGCCTCAAT GATTGATACT
CGTTTTGTTC GTAACACTGA ACAATTCGTA GGTCAAGAAT TTGACGCTAA AATTAAAGAA
GTTGATCCAG CTGAAAACCG TTTCATCCTT TCACGTCGTG AAGTTGTTGA AGCAGAAGCT
ATGGAAGCTC GTAAAGAAGT CTTCTCTAAA CTTGAAGTTG GTTCAGTAGT AACTGGTAAA
GTTGCTCGTT TGACAAGCTT CGGTGCTTTC ATTGACCTTG GTGGTGTAGA CGGACTTGTT
CACGTGACTG AATTGTCTCA CGAACGTAAC GTTTCACCTA AATCAGTTGT ATCTGTTGGT
GATGAAATTG AAGTTAAAGT TCTTGCTATT GACGAAGAAG CAGGACGTGT ATCACTCTCA
CTTAAAGCAA CAACACCTGG ACCATGGGAT GGTGTTGAAC AAAAACTTGC TGCTGGTGAT
GTAATCGAAG GTAAAGTTAA GCGTTTGACT GACTTTGGTG GTTTCGTTGA AGTATTACCA
GGAATCGATG GACTTGTTCA CATCTCACAA ATTTCACACA AACGTGTTGA AAATCCAAAA
GATGTTCTTT CAGTAGGTCA AGACGTTACT GTTAAAGTTC TTGAAGTAAA CGCTGATGCA
GAACGTGTAT CACTTTCTAT CAAAGCTCTT GAAGAACGTC CAGCTAACGC TGAAGGGGAA
AACAACGAAA AGCGTCAATC ACGTCCACGC CGTCCAAAAC GTCAAGAAAA ACGTGACTAC
GAACTTCCAG AAACTCAATC TGGATTCTCA ATGGCGGATC TTTTCGGAGA TATCGAATTG
TAA
|
|---|
| Protein sequence | MNEFEELLNS VSEVSTGDVV TAEVISVDND QANVVIEGTG IEGVLTRREL TNDRDANVAD
LVKDGETLEV LVLRQVVGKD TDTVTYLVSK KRLEARKAWD KLVGREEEVV TVKGTRAVKG
GLSVEFEGLR GFIPASMIDT RFVRNTEQFV GQEFDAKIKE VDPAENRFIL SRREVVEAEA
MEARKEVFSK LEVGSVVTGK VARLTSFGAF IDLGGVDGLV HVTELSHERN VSPKSVVSVG
DEIEVKVLAI DEEAGRVSLS LKATTPGPWD GVEQKLAAGD VIEGKVKRLT DFGGFVEVLP
GIDGLVHISQ ISHKRVENPK DVLSVGQDVT VKVLEVNADA ERVSLSIKAL EERPANAEGE
NNEKRQSRPR RPKRQEKRDY ELPETQSGFS MADLFGDIEL
|
|---|
| |