| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | STER_0007 |
|---|
| Symbol | |
|---|
| ID | 4436879 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Streptococcus thermophilus LMD-9 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008532 |
|---|
| Strand | + |
|---|
| Start bp | 6380 |
|---|
| End bp | 9886 |
|---|
| Gene Length | 3507 bp |
|---|
| Protein Length | 1168 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 38% |
|---|
| IMG OID | 639675774 |
|---|
| Product | transcription-repair coupling factor |
|---|
| Protein accession | YP_819598 |
|---|
| Protein GI | 116626979 |
|---|
| COG category | [K] Transcription
[L] Replication, recombination and repair |
|---|
| COG ID | [COG1197] Transcription-repair coupling factor (superfamily II helicase) |
|---|
| TIGRFAM ID | [TIGR00580] transcription-repair coupling factor (mfd) |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 0 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGCTAATA CAATCTTAGA GCTTTTTGAG AAGAATCATC AATTGCTTGA GTGGCGTGAT
AAGGTAAGCT TATTGAGTAG GCAATTGGTC ATGGGATTTT CTGGTTCGAG CAAGGCAGTT
GCCATGGCAT CTGCCCTTTC TAATCAGGTT CCTAAGATTT TTATAGTTAC CTCAACACAA
AATGAAGCTG AGCAATTAGT AGGAGATTTG TCAGCTATCT TAGGAGAGGA TAAGGTTTAT
TCTTTTTTTG CGGATGATGT ATCAGCTGCT GAATTTATCT TTGCTTCACC AGAAAAAACT
CATTCTCGTC TTGAAAGTCT TAACTTTTTA ATGGATGAAG AGGCAAGTGG GGTCTTGGTT
ACAAGTTTAG TTGGTACGAA GTTACATTTG CCTAATCCTA GGGTTTATAA GGACTCTCGA
ATCGACTTAG TACTAGGGAA GGAACATGAT TTAGATGCTC TCAGTAGGCA TCTAACGCAT
ATTGGGTATC AAAGAGTAGA GCAAGTTCTT TCACCTGGTG AGTTTAGTCG TAGGGGGGAT
ATTTTAGATA TTTACGAATT GACTGCAGAG CTTCCCTACC GATTAGAGTT TTTTGGAGAT
GAGATTGATG GCATTCGTCA GTTTGATAGC GATAGTCAGA AATCTTTAAA CAATTTAGAA
CATGTTGTCA TATCACCGGC GGATGATATT ATCTTAACAA GAGAAGATTA CCAACGTGCT
GAGAAGGCCC TAGAAAGTGC GATCTCGAGG GCAGACGGTC TTCATAAGGC TTACCTTGAG
GAAGTTCTAT CAGTGACGAT TGATGGTCAT CGCCATAAAG ATTTACGTAA GTTTTTGTCT
CTCTTTTATG ACAAAGCTTA TACCTTATTT GACTATCTTC CAAAAGGGAC TCCTGTATTC
ATTGATGATT TTCAAAAGAT AGTGGACCGC CATGGACGTC TTGAATTGGA AGTGGCTAAT
CTTTTAACTG AGGATCTTCA TCAAGGTAAG TCTCTGAGTC ATCTAAACTA CTTCGTGGAT
TCATTTAAGA CTTTACGTAA CTATCAGCCA GCTAGCTTCT TTTCTAATTT CCATAATGGA
TTAGGAAATC TTAAATTTGA TAAGTTGTAT CAATTCACAC AATACCCTAT GCAGGAGTTT
TTCAACCAAT TTCCATTACT GATTGACGAA ATTCGTCGTT ATACTAAGAA TAAGGCAACG
GTTATTTTAC AAGTAGGGTC TGATAAGCAA CTTAATTCTT TGAAGGAAAC CTTGGAAGAG
TACAATCTAG ATTTACCTCT TAGTAGCTTT GGAGATTTGA TACCTCATAA GGCTCAACTA
GTCCTAGGAA ACTTATCGAA TGGCTTTTAC TTTGCAGATG AAAAGGTTGT TCTGGTTACT
GAACGTGAGA TTTTTCATAA AAAAGTAAAA CGTCGTACGC GTGCTAACCA TATTTCTAAT
GCTGAGCGTC TTAAAGACTA TAATGAACTT GAAAAAGGTG ATTATGTTGT ACACCAGACT
CATGGTATAG GACAATTTAA AGGTATTGAG ACTATTGAAA TTAAAGGGGT ACACCGTGAC
TACTTGACCA TTCAATATCA GGATGCTGCA ACAATTTCTC TACCTATTGA GCAGATCGAG
AGTCTCTCTA AGTATGTGTC AGTGGACGGG AAAGAGCCTA AAATTAATAA ACTCAATGAT
GGGCGTTTCC AAAAGACCAA ACAAAAAGTA AGCAAGCAGG TAGAGGATAT TGCTGATAAT
CTCTTAAAAC TCTATGCCGA GCGAAGTCAA CTGAAAGGAT TTGCTTTTTC ACCGGATGAT
GATAATCAAA GGGATTTTGA AGATGAGTTC TCCTATGTTG AGACAGTGGA TCAACTGCGT
TCCATTAAGG AAATTAAGGC GGACATGGAG TCAGACAAAC CTATGGATCG TCTCTTGGTT
GGTGATGTTG GTTTTGGTAA GACAGAGGTA GCCATGCGTG CTGCCTTCAA GGCGGTTAAT
GATGGGAAGC AAGTTGCTAT CCTAGTTCCT ACCACAGTTC TTGCCCATCA GCATTATATG
AATTTTAAAG AGCGTTTTGA AAATCATGCT GTTGAAGTAG ATGAACTCAG TCGTTTTAGA
AGTAAAAAAG AGCAAAATGA GACTATTAAA AATCTAGCTA AAGGACGTAT TGATATTATT
ATTGGTACCC ACCGCTTGTT GTCTAAAGAT GTTAAGTTTT CTGATTTAGG CTTGCTAGTA
ATTGATGAAG AACAACGTTT TGGCGTGAAG CATAAAGAGA AACTTAAGGA GTTGAAAGCT
AAAGTTGATG TCCTTACTCT AACTGCGACC CCTATTCCTC GTACACTTCA TATGTCTATG
TTGGGTATTC GTGATTTGTC GATTATTGAG ACAGCACCTA CCAACCGTTA TCCAGTTCAA
ACTTATGTTA TGGAAACCAA TCCTGGTCTT ATTCGAGAAG CGATATTAAG GGAGATGGAC
AGAGGTGGCC AGATTTTTTA TATTTATAAT CGTGTTGAAA CCATTGATCA AAAAGTTTCT
GAACTGCATG AGCTAGTCCC TGAAGCACGT ATCGGATTTG TTCATGGTCA GATGAGTGAA
GTTATGTTGG AGAATACTCT CTTAGATTTT TTGAATGGTG ATTACGATAT TTTGGTAGCA
ACGACCATTA TCGAGACAGG CATTGATATC CCCAATGTTA ATACACTTCT CATTGAGAAT
GCAGACCATA TGGGCTTGTC TACCCTTTAT CAGCTAAGAG GTCGTGTGGG ACGTAGTAAT
CGAATTGCCT ATGCCTACCT TATGTATCAT CCTGACAAAG TGTTGACGGA AGTCTCAGAG
AAGCGTTTGG ATGCTATTAA GGGATTTACA GAACTGGGAT CAGGTTTCAA AATTGCTATG
CGTGATTTAT CTATTCGCGG TGCAGGGAAT ATTCTTGGTG CTTCTCAAAG TGGTTTCATC
GACTCAGTCG GATTTGAAAT GTACTCGCAA CTCTTGGAAG AGGCTATCAA TAAGCGTCAA
GGTAAGACTC AGGTTCGTCG AAAAGGAAAT GCAGAGTTTA ATCTTCAGAT TGATGCTTAC
CTTCCTTCTG ACTATATTTC TGACGAGCGC CAAAAAATTG AAATTTATAA GCGTATTCGT
GAAATTGAGA ATCAGAAAGA CTACCAGGAC CTTCAAGATG AGTTGATTGA CCGCTTTGGA
GAATATCCAG ATCAAGTTGC CTATCTCATT GAGATTGGTC TGGTTAAGGC CTATTTAGAT
GCTGCCTTTG CAGAATTAGT CGAGCGTAAG AACGATACTA TCATCGTTCG TTTCGAAAAA
GTCTCTCTAA AATTCTTCTT GACACAAGAC TATTTTGAAG CCATCTCTAA GACGAATTTA
AAGGCAAGAA TTAGTGATAA CCAAGGAAAA GTAGAGATTA TTTTTGATGT TCGTAACAAG
AAAGACTATG AAATCCTTGA GGAATTAAAG ATTTTTGGTC AGACATTTAT GGAAATTAAA
AAACGTAAAG AAAAAAAAGA AACTTAA
|
|---|
| Protein sequence | MANTILELFE KNHQLLEWRD KVSLLSRQLV MGFSGSSKAV AMASALSNQV PKIFIVTSTQ
NEAEQLVGDL SAILGEDKVY SFFADDVSAA EFIFASPEKT HSRLESLNFL MDEEASGVLV
TSLVGTKLHL PNPRVYKDSR IDLVLGKEHD LDALSRHLTH IGYQRVEQVL SPGEFSRRGD
ILDIYELTAE LPYRLEFFGD EIDGIRQFDS DSQKSLNNLE HVVISPADDI ILTREDYQRA
EKALESAISR ADGLHKAYLE EVLSVTIDGH RHKDLRKFLS LFYDKAYTLF DYLPKGTPVF
IDDFQKIVDR HGRLELEVAN LLTEDLHQGK SLSHLNYFVD SFKTLRNYQP ASFFSNFHNG
LGNLKFDKLY QFTQYPMQEF FNQFPLLIDE IRRYTKNKAT VILQVGSDKQ LNSLKETLEE
YNLDLPLSSF GDLIPHKAQL VLGNLSNGFY FADEKVVLVT EREIFHKKVK RRTRANHISN
AERLKDYNEL EKGDYVVHQT HGIGQFKGIE TIEIKGVHRD YLTIQYQDAA TISLPIEQIE
SLSKYVSVDG KEPKINKLND GRFQKTKQKV SKQVEDIADN LLKLYAERSQ LKGFAFSPDD
DNQRDFEDEF SYVETVDQLR SIKEIKADME SDKPMDRLLV GDVGFGKTEV AMRAAFKAVN
DGKQVAILVP TTVLAHQHYM NFKERFENHA VEVDELSRFR SKKEQNETIK NLAKGRIDII
IGTHRLLSKD VKFSDLGLLV IDEEQRFGVK HKEKLKELKA KVDVLTLTAT PIPRTLHMSM
LGIRDLSIIE TAPTNRYPVQ TYVMETNPGL IREAILREMD RGGQIFYIYN RVETIDQKVS
ELHELVPEAR IGFVHGQMSE VMLENTLLDF LNGDYDILVA TTIIETGIDI PNVNTLLIEN
ADHMGLSTLY QLRGRVGRSN RIAYAYLMYH PDKVLTEVSE KRLDAIKGFT ELGSGFKIAM
RDLSIRGAGN ILGASQSGFI DSVGFEMYSQ LLEEAINKRQ GKTQVRRKGN AEFNLQIDAY
LPSDYISDER QKIEIYKRIR EIENQKDYQD LQDELIDRFG EYPDQVAYLI EIGLVKAYLD
AAFAELVERK NDTIIVRFEK VSLKFFLTQD YFEAISKTNL KARISDNQGK VEIIFDVRNK
KDYEILEELK IFGQTFMEIK KRKEKKET
|
|---|
| |