| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | LGAS_1896 |
|---|
| Symbol | |
|---|
| ID | 4438923 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Lactobacillus gasseri ATCC 33323 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008530 |
|---|
| Strand | - |
|---|
| Start bp | 1892574 |
|---|
| End bp | 1893449 |
|---|
| Gene Length | 876 bp |
|---|
| Protein Length | 291 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 37% |
|---|
| IMG OID | 639673712 |
|---|
| Product | preprotein translocase subunit YidC |
|---|
| Protein accession | YP_819589 |
|---|
| Protein GI | 116630436 |
|---|
| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG0706] Preprotein translocase subunit YidC |
|---|
| TIGRFAM ID | [TIGR03592] membrane protein insertase, YidC/Oxa1 family, C-terminal domain |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 7 |
|---|
| Plasmid unclonability p-value | 0.000000421909 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 2 |
|---|
| Fosmid unclonability p-value | 1.20858e-25 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | GTGAGAAATC ATTTATCTAA GAAAAATTGG AAACTGATTC TATTAGGTCT AGGAATGTTA
ACCTTAGCTT TAGTAGTTAC AGGTTGTGCA TCTACTAATG GATCAAGTGT TGCTCCTATT
TCTCATACTA GTGGCAATTG GTGGGATCGG TATATTGTTT ACTATATTTC CCAATTTATT
CTTTGGATTG CAAGTTTAGT TCGTGATTCC TATGGTTGGG CAATCATTAT CTTTACTATT
ATAGTAAGAA TAATTTTATT ACCATTGAAT GCCATTTCTA TTAAGAGCAT GGCTAAGCAA
CAAAAAGTGC AACCACAGAT GGATGCATTG CGTAAAAAGT ATCCTGGCAA GGATGTTGAG
TCACGTCAAA AGCTGCAAGA AGAAACTAGT AAGTTGTATA AAGAAGCCGG CATTAATCCT
TATACTGGAT GCTTGCCGAT GCTAATTCAG CTGCCAGTTA TGTATGCCTT GTATCAAGCA
ATTTGGCGGA CTCCACAGTT ACAAAATGGT CGGTTTTTGT GGATGGATTT GGGACGTCCC
GATCCATATT ACATCATGCC TGTTTTGGCA GCTGCATTTA CTTTTATAAG TACGTATATT
AGTCAGATGT CAACGCCTCA ATCCTCACAA AATGGAATGA CTAAGGGAAT GACATACTTA
ATGCCTCTTA TCATTGGGGT TTCGGCAATT GGTATCCAAT CTGCGATCTC ACTTTACTGG
GTGATTTCAA ACTTATTCCA AGTAGTTCAA ACCTTTATTT TGCAAAATCC ATTCAAGTAT
CAACGTGAAT TGGAAGAACA AAAGAAGGCA GAACGTGAAC GTGAACGTAA AGTTCGTCGT
GTATACAAAC GTTTAGGACG TAAAAAACAA AAATAA
|
|---|
| Protein sequence | MRNHLSKKNW KLILLGLGML TLALVVTGCA STNGSSVAPI SHTSGNWWDR YIVYYISQFI
LWIASLVRDS YGWAIIIFTI IVRIILLPLN AISIKSMAKQ QKVQPQMDAL RKKYPGKDVE
SRQKLQEETS KLYKEAGINP YTGCLPMLIQ LPVMYALYQA IWRTPQLQNG RFLWMDLGRP
DPYYIMPVLA AAFTFISTYI SQMSTPQSSQ NGMTKGMTYL MPLIIGVSAI GIQSAISLYW
VISNLFQVVQ TFILQNPFKY QRELEEQKKA ERERERKVRR VYKRLGRKKQ K
|
|---|
| |