| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | LGAS_1889 |
|---|
| Symbol | |
|---|
| ID | 4438916 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Lactobacillus gasseri ATCC 33323 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008530 |
|---|
| Strand | - |
|---|
| Start bp | 1881508 |
|---|
| End bp | 1882374 |
|---|
| Gene Length | 867 bp |
|---|
| Protein Length | 288 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 26% |
|---|
| IMG OID | 639673705 |
|---|
| Product | XRE family transcriptional regulator |
|---|
| Protein accession | YP_819582 |
|---|
| Protein GI | 116630429 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | [TIGR01716] transcriptional activator, Rgg/GadR/MutR family, C-terminal domain |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 45 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 15 |
|---|
| Fosmid unclonability p-value | 0.000000000000149805 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | TTGCAAAGAG GGATAAATAT GATGATTGGC AGTCTTTTGA AAGAATATCG TTTAAAACAA
AACAAGAGCC AAAGAAAATT TATTGGTTCA ATTGTTACGC AGTCTTATTA TTCAAAAGTA
GAAAAGAATA TAAGTCAAGT TACAGCGGAC AATTTAATAG GCTTGCTTCA ATATAACAAT
ATTTCTGTAC AGGAATTTTT TAATAGCTTT AGTCAAAAAA GCGATAATTC ATACCGCCAA
ACAAAAGAAT TAGAAAATAT GATGATTGAA GCTTATTACA CTAATAATAT AGAGCAGATG
CATAATATTA AGAAAATTAT TCACGAAAGT ACTTTAAGCG AATATGATAA AAACTATCAA
ACATTAATGA CTAATGGATT TTTAGCATTA ATGAATCCAA AACTAAATAG TGAAAAGCTA
ACATCGACTA TTAAAAATAA AATTTTTGAC ATTCCATCTT ATACTCAAGA TAAGCTAATG
CTTTACTGCG ACTTTATGCG ATTTTATAGT TTATCAGATA ATGAAATAAT TACGCGAAAC
ATTTTAAAAC AGTATCAATC CACCAATGAC TCTAATATCC AAGAACTTAT TTTAGCCATA
GTATGCAATA TTCTTATTTT TTCTATTGAA AATGATAAAT TTGAAAACGT CTCTTACTTT
CTTAATAAGA TTCAAAATAT AAAAACTACG CCACAATTGC TTTTTTATAA AATAGATATT
GAGTTTTTCA AAAATATAAT TGAAATTAAA AATAGTAATG ATGCGAAAAA AATAAATAAG
TGCAAGAATT TTATTAAAAC CCTACAAGAT GCAGGCATGA AAGAATACAG CAATGAACTC
AGAAAATTCA TTAAAGATAA TTTTTGA
|
|---|
| Protein sequence | MQRGINMMIG SLLKEYRLKQ NKSQRKFIGS IVTQSYYSKV EKNISQVTAD NLIGLLQYNN
ISVQEFFNSF SQKSDNSYRQ TKELENMMIE AYYTNNIEQM HNIKKIIHES TLSEYDKNYQ
TLMTNGFLAL MNPKLNSEKL TSTIKNKIFD IPSYTQDKLM LYCDFMRFYS LSDNEIITRN
ILKQYQSTND SNIQELILAI VCNILIFSIE NDKFENVSYF LNKIQNIKTT PQLLFYKIDI
EFFKNIIEIK NSNDAKKINK CKNFIKTLQD AGMKEYSNEL RKFIKDNF
|
|---|
| |