| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | LGAS_1884 |
|---|
| Symbol | |
|---|
| ID | 4438911 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Lactobacillus gasseri ATCC 33323 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008530 |
|---|
| Strand | + |
|---|
| Start bp | 1875832 |
|---|
| End bp | 1877175 |
|---|
| Gene Length | 1344 bp |
|---|
| Protein Length | 447 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 36% |
|---|
| IMG OID | 639673700 |
|---|
| Product | D-xylose proton-symporter |
|---|
| Protein accession | YP_819577 |
|---|
| Protein GI | 116630424 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG2814] Arabinose efflux permease |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 18 |
|---|
| Plasmid unclonability p-value | 0.326848 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 16 |
|---|
| Fosmid unclonability p-value | 0.0000000000014456 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | ATGCGAAAAG AAAGGCAGAA TAATACAAAG AATATCAAAG AAAAAAAGAA TTATAAAAAG
GCACCTCTCA TGCCTATTCA CTTACGAGTA TTTATGGCCG TCGTATTAGG TCAAATCGCT
TGTGGTTTTG CTTTAGGCAT TTCTGGTACA GCTCTTTCTA ATGCTAGTAA ATATATTACA
ATTAATGATC TCTGGACTGG ATTAATTGGA GCTGGATCTT TAATAGGACT AGCTGGAAGT
ATTCTAATTG GTCGCTTATC AGATAAGATT GGTAGACGAA AGTTATTAAT GCTCAATATG
TATATTTTAG GTATTTTATC TCTAATGCAA TTACTGACTA ATAATCTACC CACTCTTTTC
ATCATCAGAG TATTAATTGG ATTAATGATT GCCGTCGATT ATACTGTTGG AAATGCACTT
TTAACTGAGT GGCTTCCTAA AGGAGAAGAC AGCAAAAAGC AAAGCCACTT GCTTATCTAT
TGGACAATTG GATTTATTGC CTCATATCTA ACAGGTACTT TTATTAATGG CTTTGGCTCA
CATACTTGGC AAATCATTTT AGCTACGGGA GCTATTCCAG CATTTATTGC CGCTATTTTC
AGATCTATTT TTCCCCTACC TGCTTCACCA AGCTGGCTTG CAAGCCACGG TAAAGTCAAA
ACAGCTAATA AAGTTATCAA AAAGCATATG GGGCGTAAAT GGGGAATTCC CAAGAGACTT
AAAAAGGCTA AACCAGTCAA AGAGGTTTCC TGGACAATAT TATTTTCCGG GAAATATTTA
CGTCGCACTC TAGTCGGTGG ACTCTTTTAC GCTTGTCAAG CTTTTGCTTT CTTTGGTATT
AGTATTTTCC TTCCAATTCT CTTGCAGAGT ATGCAACTTA CTGATCAAAA AATTTCAGGT
ATTATCTATA ATGGCGGTAT GCTCATTGGG GTTATTCTTG GAATCCTACT TTTCAATAGA
ATTAGTCGAC GCGCATTCCT TATCAGTAAT TTTTTGCTTT CAGGTATTCT AATTGGATTT
TTGGCTATTA CCAAAAACCT TAATTCAAAT ATCCAACTCA CTATCTTTTG TATCTTCGCG
ATTATTTTAT CTTCTGGTCT AGTACTTGAT TACCCATATC CAACTGAACT ATTCGATATT
AAGGTTCGTG GAACCGGCGT TGGAACTTGT ATTACTATCA GCAGATTTGG TGCCGCAGCA
GGTACCTTTT TACTGCCAAT TTTGACTAAT CAAGGCGGTG CAAGCTTATC AATGCTAATC
TGCGCAATTG TTATTTTGGC TGCCTTTATC ATCTGCCTAA TTTGGGCACC TGAAACCTCA
CCAAAATTTA AGCAAAATAA TTGA
|
|---|
| Protein sequence | MRKERQNNTK NIKEKKNYKK APLMPIHLRV FMAVVLGQIA CGFALGISGT ALSNASKYIT
INDLWTGLIG AGSLIGLAGS ILIGRLSDKI GRRKLLMLNM YILGILSLMQ LLTNNLPTLF
IIRVLIGLMI AVDYTVGNAL LTEWLPKGED SKKQSHLLIY WTIGFIASYL TGTFINGFGS
HTWQIILATG AIPAFIAAIF RSIFPLPASP SWLASHGKVK TANKVIKKHM GRKWGIPKRL
KKAKPVKEVS WTILFSGKYL RRTLVGGLFY ACQAFAFFGI SIFLPILLQS MQLTDQKISG
IIYNGGMLIG VILGILLFNR ISRRAFLISN FLLSGILIGF LAITKNLNSN IQLTIFCIFA
IILSSGLVLD YPYPTELFDI KVRGTGVGTC ITISRFGAAA GTFLLPILTN QGGASLSMLI
CAIVILAAFI ICLIWAPETS PKFKQNN
|
|---|
| |