| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | LGAS_1357 |
|---|
| Symbol | |
|---|
| ID | 4439443 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Lactobacillus gasseri ATCC 33323 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008530 |
|---|
| Strand | - |
|---|
| Start bp | 1354385 |
|---|
| End bp | 1355323 |
|---|
| Gene Length | 939 bp |
|---|
| Protein Length | 312 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 30% |
|---|
| IMG OID | 639673190 |
|---|
| Product | competence protein |
|---|
| Protein accession | YP_815157 |
|---|
| Protein GI | 116629985 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG4469] Competence protein |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 9 |
|---|
| Plasmid unclonability p-value | 0.00000492199 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 48 |
|---|
| Fosmid unclonability p-value | 0.0337065 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | TTGATTAAAA ATAAAGGAGA TGAAAAAAAT CATCTCCTTT TTGCGTATAT AATAATGGGC
GATAAAATGT ATGCTGCTAT TTTAAATCAA AAGTTAGTCT TAGCAATTAA TGAAGCAGAA
CAAGTTAGTA AAGGATTAAA AAAGTTAAAT CAAGAATCTT ATCTTTGCCC ATCTTGCAAG
CATCGAATGA TTTTGATCTT ATCAGAAGAA AAAAAGCCAT TTTTTAAACA TTTTTATCAG
GTAAGGGGAA CCGGAGAAAA GGAGGAGCAT TTACAGGCAA AGCAGTTGTT GTGTACTGCA
CTAAAAGCAA ATGGAATTCG AGCAGATGTT GAAGTTCCGC TTTTAGATCA GCAATTAAGA
GCAGACATAT TAGTAGAAAA CAACTTATCT TTTGAAGTAC AATGCGCACC GTTAAGTGAG
GCAGAATTTG CCCATCGTCA TGCCTTATAT AAAAAGTTGC AGATTAAAGA TATTTGGATT
GTTGGAAAAA GGCATTATTT AAAAAATAAA ATTAACCATT CTCAAAAAAT CTTTCTAAGA
TATAGTGCAA AATGGCAATG GTACTATTTG GAAATTAATC CATTTAGTTG TGTAATTACG
TTAAAATATA ATATTTTAAT GGCAGCACTT AGTTCAGAAC TAAGCTATGA TATAAAAACT
TTTTCATTAG ATGAAAAAGG AGTAGCTAGT TTGTTTACTT TCATTCCATC TACTAGAAGA
AATAAACTGA GTTATATTCA AGATCAAAAA GTATATTTAC AAAAACAAAT TACTCAAAAG
AGTAAACTCG GATTAGAAAT TGCTTCGCTA TTATATCAAC TACATTATTC TGTGGCAGAT
ATCCCAGATG AACTCTTCTT AAAATTACGG GAGCCTAAAG AAAAGAGTCC AATATTAATT
TTTCTGCAAA AAAAACTAGC TGACTCAAAA GTCAACTAG
|
|---|
| Protein sequence | MIKNKGDEKN HLLFAYIIMG DKMYAAILNQ KLVLAINEAE QVSKGLKKLN QESYLCPSCK
HRMILILSEE KKPFFKHFYQ VRGTGEKEEH LQAKQLLCTA LKANGIRADV EVPLLDQQLR
ADILVENNLS FEVQCAPLSE AEFAHRHALY KKLQIKDIWI VGKRHYLKNK INHSQKIFLR
YSAKWQWYYL EINPFSCVIT LKYNILMAAL SSELSYDIKT FSLDEKGVAS LFTFIPSTRR
NKLSYIQDQK VYLQKQITQK SKLGLEIASL LYQLHYSVAD IPDELFLKLR EPKEKSPILI
FLQKKLADSK VN
|
|---|
| |