| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | LGAS_1303 |
|---|
| Symbol | |
|---|
| ID | 4439492 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Lactobacillus gasseri ATCC 33323 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008530 |
|---|
| Strand | - |
|---|
| Start bp | 1293450 |
|---|
| End bp | 1295789 |
|---|
| Gene Length | 2340 bp |
|---|
| Protein Length | 779 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 34% |
|---|
| IMG OID | 639673136 |
|---|
| Product | exoribonuclease R |
|---|
| Protein accession | YP_815104 |
|---|
| Protein GI | 116629932 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG0557] Exoribonuclease R |
|---|
| TIGRFAM ID | [TIGR00358] VacB and RNase II family 3'-5' exoribonucleases
[TIGR02063] ribonuclease R |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 1 |
|---|
| Plasmid unclonability p-value | 0.00042422 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 103 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACACAAA ATGAACGAGT TTTAGCTGAT GTTTATGAAA CTTTCAGACA TAATCCTCAA
GAGCAATATG ATGTAGATCA ACTTGAAAAT GATCTCAGCC GTAATCAAAG ATTGAATTTT
CCAGATTTAG TTAAAGCTTT AACTTTTTTA GAGCATAGTA AAAAGATTGT AACTGATGGT
CAAGGAAAAT ATCAGTTGAA TCAATTAAAT ACGGTTGCTG AGGGTACATT TAAAGCTAAT
GATAAGGGGT TTGGTTTTGT TAAGTTTGAT GATGAAAGCA TGGAAGATGC CTTCATTGAT
AAACATAATA CCAAGTTTGC AATTGATGGA GACCATGTTA AGGTAAAGAT CATTGCAGGT
GCAAATCCAT GGAATGGTAG AGGACCCGAG GGTAAAATTG AGGAGATTAC CGAACGAGGA
GTTGAAACTT TAGTTGTCGA ATTTCGTCCA TATGCTGATG AAGTAGTAAA ATCAAGTGGA
TTTTATGGTT ATGTAGTTAG TGAAAATCGT AAATTAAAGA AGTATAAGAT TAATATCACT
GATAATGGTG TTAAACCACA AATGGGTGAT ATGGTAAAAA TTTCTATTAC AAAGTACCCT
GACGAAGATC AACCTGATGA AATGCAAGGT GTAGCTCTTT TAACTATTGG TAATAAGAAT
GATCCTGGTG TTGATATCAT GTCAATTGTA GTTGACAATG ATATTCGAAC TGATTGGCCT
GAAGATGCTA TGGATCAAGC GAATAATATT CCAGATCATG TAACAGAAGA AGAAAAAGCA
AAACGTGTTG ATATTACTGA TCAACCTGCT GTGACAATTG ATGGGGACGA TTCTAAAGAC
TTTGATGATG CTGTAGTAGT TTGGAAGCTT CCTAATGGTA ATTATCACTT AGGTGTACAT
ATTGCAGATG TGTCTCATTA TGTAAAAGAA GGAAGTCCGT TAGATAAAGA AGCTTTTGCT
CGTGGTAATA GTACATATTT AGTTGATCGT GTTATTCCAA TGCTTCCATT CAGATTATCA
AACGGCATTT GTTCGCTTAA TGAAGGCGTT GAACGTTTGG TTCTTTCATG TGATATGGAG
ATTACACCAG AAGGTAAGCG TGTTGGATAT AGAATATATC CATCAGTTAT GAAGTCACAT
GGTCGTTTAA CATATAACAA TGTTAATAAA GTTCTTGATC CAAATAATCA TGAAAAGCTA
GAGCAAAAAT ATGAAGACGT TGCTCCAATG CTTCACGACA TGGCTGATTT ACACAATATT
TTATATAAAC AGCGTCACCA ACGCGGAGCA ATTGATTTCG AAGAACCAGA AGCAAAGATT
ATTGTTGATG ATAAAGGTAA GCCAATTGAT ATTGTTCTTC ATGAACGTGG TACTGCTGAA
AAGATGATTG AATCATTTAT GTTAATGGCG AATGAAACAG TAGCTGAAGA TTATTACAAG
AAGCATGTTC CATTTCTTTA TCGTGTTCAC GAAACTCCAG ACCAAGAAAA GATGCAATCA
TTCTTTGAGT TTGTAAGTGC GTTTGGTTTA AATGTAAAAG CTGATCCAAA TGATGTAAAA
CCAAAAGATT TACAGAAAGT TGTAGCTAAG ACTGAAGGTA CACCTGAAGA AGCAGTTGTG
CAAATGATGA TGCTTCGTAG TTTGAAACAA GCGCATTATT CTCCAGAACC ACTTGGTCAC
TTCGGTTTAG CAGCTAAATA TTATACTCAC TTTACTTCTC CAATCCGTCG TTATTCTGAC
TTAATGGTCC ACCGAATGAT TCATGAATAT GCAGATAAGA AGATGGATAA GGATGTGCAG
AAGCATTTCA AGTCACAACT TCCTGATGTT GCTGAACAAA CTTCAACACA AGAAAGAAAG
TCAATTGATA CTGAACGTGG TGTAAATGAT TTGAAGATGA CCGAATTTAT GGCTGATAAA
GTTGGTCAAA CTTTTGATGC TATTGTTTCA TCAGTAACTA GCTTTGGGAT GTTTATTCAA
TTGCCAAATA CTGTTGAAGG TTTGATTCAT ATTTCTAACT TAAATGATGA TTATTACAAC
TTTGATGAAA AGTCATTGAC TTTAACAGGT CGCAATTCGC ACAAGCAATT TAAGATAGGA
ATGCCAATTA AAGTTAAGTT GATCAATGCA GATGTTGAGC AACATCAATT AGACTTTGAA
ATTTATGATC CAAATGCCAC AAAACGTCCG CAAAAAGGTT ATAGTCGTGG TAAGCGCAGT
TTTAATAAGG GACGTAGAAA CAATAATGGT AAGAATAATA ACTCTTTCCA TGTAAATAAT
GGTCATAGTT TTAAAATTCG CCATCGTAAG AATACAACTG TTAAAGCTAA TAAAAAATAA
|
|---|
| Protein sequence | MTQNERVLAD VYETFRHNPQ EQYDVDQLEN DLSRNQRLNF PDLVKALTFL EHSKKIVTDG
QGKYQLNQLN TVAEGTFKAN DKGFGFVKFD DESMEDAFID KHNTKFAIDG DHVKVKIIAG
ANPWNGRGPE GKIEEITERG VETLVVEFRP YADEVVKSSG FYGYVVSENR KLKKYKINIT
DNGVKPQMGD MVKISITKYP DEDQPDEMQG VALLTIGNKN DPGVDIMSIV VDNDIRTDWP
EDAMDQANNI PDHVTEEEKA KRVDITDQPA VTIDGDDSKD FDDAVVVWKL PNGNYHLGVH
IADVSHYVKE GSPLDKEAFA RGNSTYLVDR VIPMLPFRLS NGICSLNEGV ERLVLSCDME
ITPEGKRVGY RIYPSVMKSH GRLTYNNVNK VLDPNNHEKL EQKYEDVAPM LHDMADLHNI
LYKQRHQRGA IDFEEPEAKI IVDDKGKPID IVLHERGTAE KMIESFMLMA NETVAEDYYK
KHVPFLYRVH ETPDQEKMQS FFEFVSAFGL NVKADPNDVK PKDLQKVVAK TEGTPEEAVV
QMMMLRSLKQ AHYSPEPLGH FGLAAKYYTH FTSPIRRYSD LMVHRMIHEY ADKKMDKDVQ
KHFKSQLPDV AEQTSTQERK SIDTERGVND LKMTEFMADK VGQTFDAIVS SVTSFGMFIQ
LPNTVEGLIH ISNLNDDYYN FDEKSLTLTG RNSHKQFKIG MPIKVKLINA DVEQHQLDFE
IYDPNATKRP QKGYSRGKRS FNKGRRNNNG KNNNSFHVNN GHSFKIRHRK NTTVKANKK
|
|---|
| |